See <https://builds.apache.org/job/ctakes-trunk-compiletest/799/changes>
Changes: [tmill] Fixes to thyme readers to allow for reading deepphe data. ------------------------------------------ [...truncated 15243 lines...] Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/stopWords.data> (No such file or directory) ** Error: problem of opening/reading stop words file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/stopWords.data'.> Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/nonInfoWords.data> (No such file or directory) ** Error: problem of opening/reading non-Info words file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/nonInfoWords.data'.> Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/conjunctionWord.data> (No such file or directory) ** Error: problem of opening/reading conjunction words file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/conjunctionWord.data'.> ** ERR: problem of opening/reading diacritics file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/diacriticMap.data'.> Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/diacriticMap.data> (No such file or directory) Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/ligatureMap.data> (No such file or directory) ** Error: problem of opening/reading ligature file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/ligatureMap.data'.> ** Error: problem of opening/reading symbol synonym file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/synonymMap.data'.> Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/synonymMap.data> (No such file or directory) **Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/removeS.data'.> Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/removeS.data> (No such file or directory) ** Error: problem of opening/reading Unicode symbol file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/symbolMap.data'.> Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/symbolMap.data> (No such file or directory) ** Error: problem of opening/reading Unicode file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/unicodeMap.data'.> Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/unicodeMap.data> (No such file or directory) ** Error: problem of opening/reading nonStripMap file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/nonStripMap.data'.> Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/nonStripMap.data> (No such file or directory) Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/rules/im.rul> (No such file or directory) **Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal//data/rules/im.rul'.> Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/rules/im.rul> (No such file or directory) **Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal//data/rules/im.rul'.> Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/rules/dm.rul> (No such file or directory) **Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal//data/rules/dm.rul'.> Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/rules/dm.rul> (No such file or directory) **Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal//data/rules/dm.rul'.> 17 May 2016 20:02:21 INFO LvgCmdApiResourceImpl - cd <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal> 17 May 2016 20:02:21 INFO TokenizerAnnotatorPTB - Initializing org.apache.ctakes.core.ae.TokenizerAnnotatorPTB 17 May 2016 20:02:21 INFO POSTagger - POS tagger model file: org/apache/ctakes/postagger/models/mayo-pos.zip 17 May 2016 20:02:22 INFO SentenceDetector - Starting processing. 17 May 2016 20:02:22 INFO TokenizerAnnotatorPTB - process(JCas) in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB 17 May 2016 20:02:22 INFO LvgAnnotator - process(JCas) 17 May 2016 20:02:22 INFO ContextDependentTokenizerAnnotator - process(JCas) 17 May 2016 20:02:22 INFO POSTagger - process(JCas) Null value found in Feature(<Time-Class->, <NULL>) Null value found in Feature(<Time-Class->, <NULL>) Null value found in Feature(<Time-Class->, <NULL>) Null value found in Feature(<Time-Class->, <NULL>) Null value found in Feature(<Time-Class->, <NULL>) 17 May 2016 20:02:22 INFO EventTimeRelationAnnotatorTest - Relation: RelationArgument id: 0 argument: TimeMention sofa: _InitialView begin: 58 end: 66 id: 0 ontologyConceptArr: <null> typeID: 0 segmentID: <null> sentenceID: <null> discoveryTechnique: 0 confidence: 0.0 polarity: 0 uncertainty: 0 conditional: false generic: false subject: <null> historyOf: 0 originalText: <null> date: <null> time: <null> timeClass: <null> role: "Arg1" participatesIn: <null> RelationArgument id: 0 argument: EventMention sofa: _InitialView begin: 67 end: 76 id: 0 ontologyConceptArr: <null> typeID: 0 segmentID: <null> sentenceID: <null> discoveryTechnique: 0 confidence: 1.3807402 polarity: 0 uncertainty: 0 conditional: false generic: false subject: <null> historyOf: 0 originalText: <null> event: Event id: 0 ontologyConcept: <null> mentions: <null> discoveryTechnique: 0 confidence: 0.0 conditional: false generic: false subject: <null> polarity: 0 uncertainty: 0 historyOf: 0 properties: EventProperties contextualModality: <null> contextualAspect: <null> permanence: <null> category: <null> aspect: <null> docTimeRel: <null> degree: <null> polarity: 0 role: "Arg2" participatesIn: <null> Category: CONTAINS Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 15.448 sec Running org.apache.ctakes.temporal.ae.EventEventRelationAnnotatorTest 17 May 2016 20:02:25 INFO ClearNLPDependencyParserAE - using Morphy analysis? true Loading configuration. Loading feature templates. Loading lexica. Loading model: ..Java HotSpot(TM) 64-Bit Server VM warning: INFO: os::commit_memory(0x0000000754280000, 409993216, 0) failed; error='Cannot allocate memory' (errno=12) # # There is insufficient memory for the Java Runtime Environment to continue. # Native memory allocation (mmap) failed to map 409993216 bytes for committing reserved memory. # An error report file with more information is saved as: # <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/hs_err_pid4041.log> Results : Tests run: 3, Failures: 0, Errors: 0, Skipped: 0 [JENKINS] Recording test results [JENKINS] Archiving disabled [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary: [INFO] [INFO] Apache cTAKES ..................................... SUCCESS [5.145s] [INFO] Apache cTAKES common type system .................. SUCCESS [9.641s] [INFO] Apache cTAKES utils ............................... SUCCESS [2.772s] [INFO] Apache cTAKES Resources core ...................... SUCCESS [1.711s] [INFO] Apache cTAKES core ................................ SUCCESS [35.029s] [INFO] Apache cTAKES Resources pos-tagger ................ SUCCESS [1.430s] [INFO] Apache cTAKES part-of-speech tagger ............... SUCCESS [4.724s] [INFO] Apache cTAKES Resources ctakes-chunker-res ........ SUCCESS [1.356s] [INFO] Apache cTAKES chunker ............................. SUCCESS [3.115s] [INFO] Apache cTAKES document preprocessor ............... SUCCESS [2.678s] [INFO] Apache cTAKES Resources dictionary-lookup ......... SUCCESS [20.320s] [INFO] Apache cTAKES dictionary lookup ................... SUCCESS [3.666s] [INFO] Apache cTAKES context dependent tokenizer ......... SUCCESS [4.367s] [INFO] Apache cTAKES Resources lvg ....................... SUCCESS [29.674s] [INFO] Apache cTAKES LVG lexical tools ................... SUCCESS [4.072s] [INFO] Apache cTAKES Resources ne-contexts ............... SUCCESS [1.311s] [INFO] Apache cTAKES named entity contexts ............... SUCCESS [4.190s] [INFO] Apache cTAKES Resources constituency-parser ....... SUCCESS [1.578s] [INFO] Apache cTAKES Constituency Parser ................. SUCCESS [2.233s] [INFO] Apache cTAKES Resources coreference ............... SUCCESS [1.546s] [INFO] Apache cTAKES Resources relation-extractor ........ SUCCESS [1.300s] [INFO] Apache cTAKES Resources dependency-parser ......... SUCCESS [3.225s] [INFO] Apache cTAKES Dependency Parser ................... SUCCESS [28.167s] [INFO] Apache cTAKES Relation Extractor .................. SUCCESS [10.148s] [INFO] Apache cTAKES CoReference Resolver ................ SUCCESS [9.347s] [INFO] Apache cTAKES Resources drug-ner .................. SUCCESS [1.473s] [INFO] Apache cTAKES Drug NER ............................ SUCCESS [6.303s] [INFO] Apache cTAKES Resources side-effect ............... SUCCESS [1.621s] [INFO] Apache cTAKES Side Effects ........................ SUCCESS [9.758s] [INFO] Apache cTAKES Resources smoking-status ............ SUCCESS [1.737s] [INFO] Apache cTAKES Smoking Status ...................... SUCCESS [7.463s] [INFO] Apache cTAKES Resources assertion ................. SUCCESS [2.503s] [INFO] Apache cTAKES Assertion ........................... SUCCESS [6.788s] [INFO] Apache cTAKES Resources assertion-zoner ........... SUCCESS [1.567s] [INFO] Apache cTAKES Assertion's zoner ................... SUCCESS [2.083s] [INFO] Apache cTAKES Resources temporal .................. SUCCESS [4.499s] [INFO] Apache cTAKES Resources dictionary-lookup-fast-res SUCCESS [4.825s] [INFO] Apache cTAKES dictionary lookup fast .............. SUCCESS [12.766s] [INFO] Apache cTAKES Resources ctakes-ytex-res ........... SUCCESS [2.557s] [INFO] Apache cTAKES YTEX ................................ SUCCESS [11.470s] [INFO] Apache cTAKES YTEX UIMA ........................... SUCCESS [11.652s] [INFO] Apache cTAKES ctakes-clinical-pipeline ............ SUCCESS [10.461s] [INFO] Apache cTAKES Temporal Information Extraction ..... FAILURE [1:15.744s] [INFO] Apache cTAKES YTEX Web ............................ SKIPPED [INFO] Apache cTAKES Distribution ........................ SKIPPED [INFO] Apache cTAKES Regression-test ..................... SKIPPED [INFO] Apache cTAKES template filler ..................... SKIPPED [INFO] ctakes-examples ................................... SKIPPED [INFO] ------------------------------------------------------------------------ [INFO] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Total time: 6:59.069s [INFO] Finished at: Tue May 17 20:02:29 UTC 2016 [INFO] Final Memory: 107M/674M [INFO] ------------------------------------------------------------------------ [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled Waiting for Jenkins to finish collecting data [ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (default-test) on project ctakes-temporal: Execution default-test of goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test failed: The forked VM terminated without saying properly goodbye. VM crash or System.exit called ? -> [Help 1] [ERROR] [ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch. [ERROR] Re-run Maven using the -X switch to enable full debug logging. [ERROR] [ERROR] For more information about the errors and possible solutions, please read the following articles: [ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/PluginExecutionException [ERROR] [ERROR] After correcting the problems, you can resume the build with the command [ERROR] mvn <goals> -rf :ctakes-temporal Sending e-mails to: notifications@ctakes.apache.org timothy.mil...@childrens.harvard.edu channel stopped
