See <https://builds.apache.org/job/ctakes-trunk-compiletest/782/changes>
Changes: [clin] use the new sentence dectector [clin] 1. use the newest sentence detector 2. change the data split, so we can test on the real test set 3. normalize timex to string ------------------------------------------ [...truncated 11075 lines...] [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.ProcedureMethodModifier_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.RangeAnnotation'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.RangeAnnotation_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.RomanNumeralAnnotation'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.RomanNumeralAnnotation_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SemanticArgument'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SemanticArgument_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SemanticRoleRelation'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SemanticRoleRelation_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SeverityModifier'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SeverityModifier_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SignSymptomMention'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SignSymptomMention_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SubjectModifier'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SubjectModifier_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.TimeAnnotation'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.TimeAnnotation_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.TimeMention'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.TimeMention_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.UncertaintyModifier'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.UncertaintyModifier_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.List'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.List_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.Paragraph'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.Paragraph_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.Segment'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.Segment_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.Sentence'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.Sentence_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.util.Pair'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.util.Pair_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.util.Pairs'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.util.Pairs_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.util.ProbabilityDistribution'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.util.ProbabilityDistribution_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.ytex.uima.types.Date'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.ytex.uima.types.Date_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.ytex.uima.types.DocKey'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.ytex.uima.types.DocKey_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.ytex.uima.types.KeyValuePair'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.ytex.uima.types.KeyValuePair_Type'. [INFO] [INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-ytex-uima --- [INFO] Compiling 322 source files to <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-ytex-uima/target/classes> [INFO] [INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-ytex-uima --- [debug] execute contextualize [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] Copying 3 resources [INFO] Copying 3 resources [INFO] [INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-ytex-uima --- [INFO] Compiling 11 source files to <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-ytex-uima/target/test-classes> [WARNING] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-ytex-uima/src/test/java/org/apache/ctakes/ytex/uima/annotators/SenseDisambiguatorAnnotatorTest.java>:[87,31] [unchecked] unchecked method invocation: method createConceptGraph in interface ConceptDao is applied to given types [WARNING] required: String,String,String,boolean,Set<String> found: <null>,String,String,boolean,Set <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-ytex-uima/src/test/java/org/apache/ctakes/ytex/uima/annotators/SenseDisambiguatorAnnotatorTest.java>:[89,15] [unchecked] unchecked conversion [INFO] [INFO] --- maven-surefire-plugin:2.12.1:test (default-test) @ ctakes-ytex-uima --- [INFO] Tests are skipped. [JENKINS] Archiving disabled [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building Apache cTAKES ctakes-clinical-pipeline 3.2.3-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] [INFO] --- maven-clean-plugin:2.4.1:clean (default-clean) @ ctakes-clinical-pipeline --- [INFO] [INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-clinical-pipeline --- [INFO] [INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-clinical-pipeline --- [debug] execute contextualize [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-clinical-pipeline/src/main/resources> [INFO] Copying 3 resources [INFO] [INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-clinical-pipeline --- [INFO] Compiling 5 source files to <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-clinical-pipeline/target/classes> [WARNING] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-clinical-pipeline/src/main/java/org/apache/ctakes/clinicalpipeline/ae/ExtractionPrepAnnotator.java>:[152,23] [unchecked] unchecked call to add(E) as a member of the raw type Set [WARNING] where E is a type-variable: E extends Object declared in interface Set <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-clinical-pipeline/src/main/java/org/apache/ctakes/clinicalpipeline/runtime/BagOfAnnotationsGenerator.java>:[92,55] [unchecked] unchecked cast [INFO] [INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-clinical-pipeline --- [INFO] [INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-clinical-pipeline --- [debug] execute contextualize [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-clinical-pipeline/src/main/resources> [INFO] Copying 3 resources [INFO] Copying 3 resources [INFO] [INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-clinical-pipeline --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-clinical-pipeline --- [debug] execute contextualize [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-clinical-pipeline/src/test/resources> [INFO] Copying 3 resources [INFO] Copying 3 resources [INFO] [INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-clinical-pipeline --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:2.12.1:test (default-test) @ ctakes-clinical-pipeline --- [INFO] Surefire report directory: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-clinical-pipeline/target/surefire-reports> ------------------------------------------------------- T E S T S ------------------------------------------------------- Results : Tests run: 0, Failures: 0, Errors: 0, Skipped: 0 [JENKINS] Recording test results [JENKINS] Archiving disabled [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building Apache cTAKES Temporal Information Extraction 3.2.3-SNAPSHOT [INFO] ------------------------------------------------------------------------ Downloading: http://repository.apache.org/snapshots/org/apache/ctakes/ctakes-sentdetect-cleartk/3.2.3-SNAPSHOT/maven-metadata.xml Downloading: http://repository.apache.org/snapshots/org/apache/ctakes/ctakes-sentdetect-cleartk/3.2.3-SNAPSHOT/ctakes-sentdetect-cleartk-3.2.3-SNAPSHOT.pom [WARNING] The POM for org.apache.ctakes:ctakes-sentdetect-cleartk:jar:3.2.3-SNAPSHOT is missing, no dependency information available Downloading: http://repository.apache.org/snapshots/org/apache/ctakes/ctakes-sentdetect-cleartk/3.2.3-SNAPSHOT/ctakes-sentdetect-cleartk-3.2.3-SNAPSHOT.jar [JENKINS] Archiving disabled [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary: [INFO] [INFO] Apache cTAKES ..................................... SUCCESS [1.885s] [INFO] Apache cTAKES common type system .................. SUCCESS [10.162s] [INFO] Apache cTAKES utils ............................... SUCCESS [2.458s] [INFO] Apache cTAKES Resources core ...................... SUCCESS [0.707s] [INFO] Apache cTAKES core ................................ SUCCESS [10.779s] [INFO] Apache cTAKES Resources pos-tagger ................ SUCCESS [0.591s] [INFO] Apache cTAKES part-of-speech tagger ............... SUCCESS [3.950s] [INFO] Apache cTAKES Resources ctakes-chunker-res ........ SUCCESS [0.536s] [INFO] Apache cTAKES chunker ............................. SUCCESS [1.553s] [INFO] Apache cTAKES document preprocessor ............... SUCCESS [1.825s] [INFO] Apache cTAKES Resources dictionary-lookup ......... SUCCESS [13.091s] [INFO] Apache cTAKES dictionary lookup ................... SUCCESS [2.941s] [INFO] Apache cTAKES context dependent tokenizer ......... SUCCESS [2.716s] [INFO] Apache cTAKES Resources lvg ....................... SUCCESS [51.637s] [INFO] Apache cTAKES LVG lexical tools ................... SUCCESS [3.172s] [INFO] Apache cTAKES Resources ne-contexts ............... SUCCESS [0.483s] [INFO] Apache cTAKES named entity contexts ............... SUCCESS [2.250s] [INFO] Apache cTAKES Resources constituency-parser ....... SUCCESS [0.877s] [INFO] Apache cTAKES Constituency Parser ................. SUCCESS [1.442s] [INFO] Apache cTAKES Resources coreference ............... SUCCESS [0.682s] [INFO] Apache cTAKES Resources relation-extractor ........ SUCCESS [0.692s] [INFO] Apache cTAKES Resources dependency-parser ......... SUCCESS [0.971s] [INFO] Apache cTAKES Dependency Parser ................... SUCCESS [22.042s] [INFO] Apache cTAKES Relation Extractor .................. SUCCESS [7.613s] [INFO] Apache cTAKES CoReference Resolver ................ SUCCESS [9.464s] [INFO] Apache cTAKES Resources drug-ner .................. SUCCESS [0.552s] [INFO] Apache cTAKES Drug NER ............................ SUCCESS [4.648s] [INFO] Apache cTAKES Resources side-effect ............... SUCCESS [0.646s] [INFO] Apache cTAKES Side Effects ........................ SUCCESS [5.815s] [INFO] Apache cTAKES Resources smoking-status ............ SUCCESS [0.625s] [INFO] Apache cTAKES Smoking Status ...................... SUCCESS [7.667s] [INFO] Apache cTAKES Resources assertion ................. SUCCESS [0.818s] [INFO] Apache cTAKES Assertion ........................... SUCCESS [5.548s] [INFO] Apache cTAKES Resources assertion-zoner ........... SUCCESS [0.646s] [INFO] Apache cTAKES Assertion's zoner ................... SUCCESS [1.212s] [INFO] Apache cTAKES Resources temporal .................. SUCCESS [0.738s] [INFO] Apache cTAKES Resources dictionary-lookup-fast-res SUCCESS [1.196s] [INFO] Apache cTAKES dictionary lookup fast .............. SUCCESS [7.109s] [INFO] Apache cTAKES Resources ctakes-ytex-res ........... SUCCESS [0.899s] [INFO] Apache cTAKES YTEX ................................ SUCCESS [10.605s] [INFO] Apache cTAKES YTEX UIMA ........................... SUCCESS [8.097s] [INFO] Apache cTAKES ctakes-clinical-pipeline ............ SUCCESS [4.307s] [INFO] Apache cTAKES Temporal Information Extraction ..... FAILURE [1.665s] [INFO] Apache cTAKES YTEX Web ............................ SKIPPED [INFO] Apache cTAKES Distribution ........................ SKIPPED [INFO] Apache cTAKES Regression-test ..................... SKIPPED [INFO] Apache cTAKES template filler ..................... SKIPPED [INFO] ctakes-examples ................................... SKIPPED [INFO] ------------------------------------------------------------------------ [INFO] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Total time: 3:45.090s [INFO] Finished at: Fri Mar 11 22:08:13 UTC 2016 [INFO] Final Memory: 94M/586M [INFO] ------------------------------------------------------------------------ [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled Waiting for Jenkins to finish collecting data [ERROR] Failed to execute goal on project ctakes-temporal: Could not resolve dependencies for project org.apache.ctakes:ctakes-temporal:jar:3.2.3-SNAPSHOT: Could not find artifact org.apache.ctakes:ctakes-sentdetect-cleartk:jar:3.2.3-SNAPSHOT in Nexus (http://repository.apache.org/snapshots) -> [Help 1] [ERROR] [ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch. [ERROR] Re-run Maven using the -X switch to enable full debug logging. [ERROR] [ERROR] For more information about the errors and possible solutions, please read the following articles: [ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/DependencyResolutionException [ERROR] [ERROR] After correcting the problems, you can resume the build with the command [ERROR] mvn <goals> -rf :ctakes-temporal Sending e-mails to: notifications@ctakes.apache.org c...@apache.org channel stopped
