See <https://builds.apache.org/job/ctakes-trunk-compiletest/255/changes>
Changes: [tmill] Removed problem feature from event-event and added confidence to time annotator. [tmill] First pass at event-event classifier and eval scripts, mostly copy/pasted from event-time versions. Much consolidation possible later. ------------------------------------------ [...truncated 2652 lines...] root(Therapy, Medical Nutrition Therapy for Hyperlipidemia) prep(for, Therapy) pobj(Hyperlipidemia, for) Semantic Roles: SOURCE SENTENCE:Referral from: Julie Tester, RD, LD, CNSD Dependency Parse: null(Referral from: Julie Tester, RD, LD, CNSD, TOP) root(Referral, Referral from: Julie Tester, RD, LD, CNSD) prep(from, Referral) punct(:, from) nn(Julie, Tester) pobj(Tester, from) punct(,, Tester) conj(RD, Tester) punct(,, RD) conj(LD, RD) punct(,, LD) npadvmod(CNSD, LD) Semantic Roles: SOURCE SENTENCE:Phone contact: (555) 555-1212 Dependency Parse: null(Phone contact: (555) 555-1212, TOP) nn(Phone, contact) nsubj(contact, 555-1212) punct(:, 555-1212) punct((, 555-1212) num(555, 555-1212) punct(), 555-1212) root(555-1212, Phone contact: (555) 555-1212) Semantic Roles: SOURCE SENTENCE:Height: 144 cm Current Weight: 45 kg Date of current weight: 02-29-2001 Admit Weight: 53 kg BMI: 18 kg/m2 Dependency Parse: null(Height: 144 cm Current Weight: 45 kg Date of current weight: 02-29-2001 Admit Weight: 53 kg BMI: 18 kg/m2, TOP) nsubj(Height, cm) punct(:, cm) num(144, cm) nn(cm, Weight) amod(Current, Weight) nsubj(Weight, kg) punct(:, kg) num(45, kg) appos(kg, cm) nsubj(Date, kg) prep(of, Date) amod(current, weight) pobj(weight, of) punct(:, kg) number(02, 29) punct(-, 29) hmod(29, 2001) hyph(-, 2001) num(2001, Admit) nn(Admit, Weight) nsubj(Weight, kg) punct(:, kg) num(53, kg) ccomp(kg, kg) nsubj(BMI, kg) punct(:, kg) num(18, kg) root(kg, Height: 144 cm Current Weight: 45 kg Date of current weight: 02-29-2001 Admit Weight: 53 kg BMI: 18 kg/m2) punct(/, m2) prep(m2, kg) Semantic Roles: SOURCE SENTENCE:Diet: General Dependency Parse: null(Diet: General, TOP) dep(Diet, General) punct(:, General) root(General, Diet: General) Semantic Roles: SOURCE SENTENCE:Daily Calorie needs (kcals): 1500 calories, assessed as HB + 20% for activity. Dependency Parse: null(Daily Calorie needs (kcals): 1500 calories, assessed as HB + 20% for activity., TOP) amod(Daily, needs) nn(Calorie, needs) dep(needs, calories) punct((, needs) appos(kcals, needs) punct(), needs) punct(:, calories) num(1500, calories) root(calories, Daily Calorie needs (kcals): 1500 calories, assessed as HB + 20% for activity.) punct(,, calories) partmod(assessed, calories) prep(as, assessed) pobj(HB, as) punct(+, HB) num(20, %) appos(%, HB) prep(for, %) pobj(activity, for) punct(., calories) Semantic Roles: assessedassess.01(A1=calories AM-MNR=as ) SOURCE SENTENCE:Daily Protein needs: 40 grams, assessed as 1.0 g/kg. Dependency Parse: null(Daily Protein needs: 40 grams, assessed as 1.0 g/kg., TOP) amod(Daily, Protein) nsubj(Protein, needs) ccomp(needs, assessed) punct(:, needs) num(40, grams) dobj(grams, needs) punct(,, assessed) root(assessed, Daily Protein needs: 40 grams, assessed as 1.0 g/kg.) prep(as, assessed) num(1.0, g) pobj(g, as) punct(/, kg) prep(kg, g) punct(., assessed) Semantic Roles: needsneed.01(A0=Protein A1=grams ) assessedassess.01() SOURCE SENTENCE:Pt has been on a 3-day calorie count and has had an average intake of 1100 calories. Dependency Parse: null(Pt has been on a 3-day calorie count and has had an average intake of 1100 calories., TOP) nsubj(Pt, been) aux(has, been) root(been, Pt has been on a 3-day calorie count and has had an average intake of 1100 calories.) prep(on, been) det(a, count) hmod(3, day) hyph(-, day) nn(day, count) nn(calorie, count) pobj(count, on) cc(and, been) aux(has, had) conj(had, been) det(an, intake) amod(average, intake) dobj(intake, had) prep(of, intake) num(1100, calories) pobj(calories, of) punct(., been) Semantic Roles: hashave.01() beenbe.01(A1=Pt A2=on ) hashave.01() hadhave.03(A0=Pt A1=intake ) SOURCE SENTENCE:She was instructed to drink 2-3 cans of liquid supplement to help promote weight gain. Dependency Parse: null(She was instructed to drink 2-3 cans of liquid supplement to help promote weight gain., TOP) nsubjpass(She, instructed) auxpass(was, instructed) root(instructed, She was instructed to drink 2-3 cans of liquid supplement to help promote weight gain.) aux(to, drink) xcomp(drink, instructed) number(2, 3) punct(-, 3) num(3, cans) dobj(cans, drink) prep(of, cans) nn(liquid, supplement) pobj(supplement, of) aux(to, help) advcl(help, drink) amod(promote, gain) nn(weight, gain) dobj(gain, help) punct(., instructed) Semantic Roles: wasbe.03() instructedinstruct.01(A1=She A2=drink ) drinkdrink.01(A0=She A1=cans AM-PRP=help ) helphelp.01(A1=gain ) SOURCE SENTENCE:She agrees with the plan and has my number for further assessment. Dependency Parse: null(She agrees with the plan and has my number for further assessment., TOP) nsubj(She, agrees) root(agrees, She agrees with the plan and has my number for further assessment.) prep(with, agrees) det(the, plan) pobj(plan, with) cc(and, agrees) conj(has, agrees) poss(my, number) dobj(number, has) prep(for, has) amod(further, assessment) pobj(assessment, for) punct(., agrees) Semantic Roles: agreesagree.01(A0=She A1=with ) hashave.03(A0=She A1=number ) SOURCE SENTENCE:May want a Resting Metabolic Rate as well. Dependency Parse: null(May want a Resting Metabolic Rate as well., TOP) aux(May, want) root(want, May want a Resting Metabolic Rate as well.) det(a, Rate) nn(Resting, Rate) amod(Metabolic, Rate) dobj(Rate, want) advmod(as, well) advmod(well, want) punct(., want) Semantic Roles: wantwant.01(AM-MOD=May A1=Rate AM-DIS=well ) SOURCE SENTENCE:She takes an aspirin a day for knee pain. Dependency Parse: null(She takes an aspirin a day for knee pain., TOP) nsubj(She, takes) root(takes, She takes an aspirin a day for knee pain.) det(an, aspirin) dobj(aspirin, takes) det(a, day) npadvmod(day, takes) prep(for, takes) nn(knee, pain) pobj(pain, for) punct(., takes) Semantic Roles: takestake.01(A0=She A1=aspirin AM-TMP=day AM-PRP=for ) Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 35.85 sec Results : Tests run: 1, Failures: 0, Errors: 0, Skipped: 0 ERROR: Maven JVM terminated unexpectedly with exit code 143
