Hello Jennie,
Thank you for correspondence.
I've tried with the lastest current RPMs[20070602],
but I unfortunately got another errors (trace is attached).
Could you check it?
thanks,
Makoto
[20070602]
http://monetdb.cwi.nl/testing/projects/monetdb/Current/.DailyBuilds./20070602/RPMs/SUSE10.2.i386.oid32/
On 6/2/2007 1:39 AM, Ying Zhang wrote:
Hello Makoto,
Sorry for the delay, but I have finally removed the limitation on the
maximum number of parameters allowed. I hope it still helps. Your
query now returns results, instead of error. Although I don't know what
the expected output should it, I think it looks quite OK.
My changes have just been checked in into the CVS HEAD branch. It
should be available in the next nightly build.
MAPI = [EMAIL PROTECTED]:50000
QUERY = import module namespace test = "xrpc-test-function"
at "/usr/share/MonetDB/xrpc/export/xrpc-mod.xq";
(: local database :)
declare variable $blast-gb := fn:doc("blast-gb.xml")/result;
declare variable $blast-uniprot := fn:doc("blast-uniprot.xml")/result;
(: remote basebase :)
declare variable $remote-endpoint := "xanadu.naist.jp";
let $gb_entry := (for $e in $blast-gb/BlastOutput
let $hit :=
$e/BlastOutput_iterations/Iteration/Iteration_hits/Hit
ERROR = !ERROR: interpret_params: reverse(param 1): invalid BAT.
!ERROR: interpret_params: reverse(param 1): evaluation error.
!ERROR: interpret_params: insert(param 3): evaluation error.
!ERROR: interpret_params: leftfetchjoin(param 2): evaluation error.
mapi_query_part:1714:import module namespace test = "xrpc-test-function"
at "/usr/share/MonetDB/xrpc/export/xrpc-mod.xq";
(: local database :)
declare variable $blast-gb := fn:doc("blast-gb.xml")/result;
declare variable $blast-uniprot := fn:doc("blast-uniprot.xml")/result;
(: remote basebase :)
declare variable $remote-endpoint := "xanadu.naist.jp";
let $gb_entry := (for $e in $blast-gb/BlastOutput
let $hit :=
$e/BlastOutput_iterations/Iteration/Iteration_hits/Hit
where $hit/Hit_num = 1 and $hit/Hit_hsps/Hsp/Hsp_evalue/text()
<= 1.0e-8
return $e),
$uniprot_entry := (for $e in $blast-uniprot/BlastOutput
let $hit :=
$e/BlastOutput_iterations/Iteration/Iteration_hits/Hit
where $hit/Hit_num = 1 and
$hit/Hit_hsps/Hsp/Hsp_evalue/text() <= 1.0e-8
return $e)
where $gb_entry/BlastOutput_query-def/text() =
$uniprot_entry/BlastOutput_query-def/text()
return
<result>
{
let $gb-hit :=
$gb_entry/BlastOutput_iterations/Iteration/Iteration_hits/Hit,
$gb-key := fn:data($gb-hit/Hit_gb/text())
return
let $genbank-remote-entries :=
execute at {$remote-endpoint} { test:q1($gb-key) }
for $remote_entry at $pos in $genbank-remote-entries
let $gb_definition := $remote_entry/INSDSeq_definition,
$gb_feature := $remote_entry/INSDSeq_feature-table/INSDFeature,
$blast_evalue := $gb-hit[Hit_gb/text() =
$remote_entry/INSDSeq_accession-version/text()]/Hit_hsps/Hsp/Hsp_evalue
return <genbank num="{ $pos }">{ $blast_evalue, $gb_definition,
$gb_feature } </genbank>
}
</result>
fetch next block: start at:0
got next block: length:248
text:!ERROR: interpret_params: reverse(param 1): invalid BAT.
!ERROR: interpret_params: reverse(param 1): evaluation error.
!ERROR: interpret_params: insert(param 3): evaluation error.
!ERROR: interpret_params: leftfetchjoin(param 2): evaluation error.
got complete block:
text:!ERROR: interpret_params: reverse(param 1): invalid BAT.
!ERROR: interpret_params: reverse(param 1): evaluation error.
!ERROR: interpret_params: insert(param 3): evaluation error.
!ERROR: interpret_params: leftfetchjoin(param 2): evaluation error.
read_line:!ERROR: interpret_params: reverse(param 1): invalid BAT.
allocating new result set
got complete block:
text:!ERROR: interpret_params: reverse(param 1): evaluation error.
!ERROR: interpret_params: insert(param 3): evaluation error.
!ERROR: interpret_params: leftfetchjoin(param 2): evaluation error.
read_line:!ERROR: interpret_params: reverse(param 1): evaluation error.
got complete block:
text:!ERROR: interpret_params: insert(param 3): evaluation error.
!ERROR: interpret_params: leftfetchjoin(param 2): evaluation error.
read_line:!ERROR: interpret_params: insert(param 3): evaluation error.
got complete block:
text:!ERROR: interpret_params: leftfetchjoin(param 2): evaluation error.
read_line:!ERROR: interpret_params: leftfetchjoin(param 2): evaluation error.
fetch next block: start at:248
got next block: length:0
text:
got complete block:
text:
read_line:
closing result set
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