Using one big "a" partition means:

- higher risk of filesystem damage to system partitions after an
unsafe restart (crash, power failure): if a partition isn't actively
written to, it's less likely to suffer damage

- missing protective flags (e.g. nodev, nosuid) that are set on
mounts that don't need to hold device nodes/suid binaries

* running a system configuration that is further away from what
other users are running, increasing the chance that you'll run
into bugs that others haven't found yet *

The workaround some have been suggesting (using the i386 boot loader to
run amd64) takes you *even further* from a standard configuration. It
might get you out of a hole, but do yourself a favour, reinstall with
a more normal partition layout and restore from your backups.

(it doesn't need to be the automatic default, but it's at least
advisable to have separate partitions for /, /usr, /usr/local, /var,
/home, and probably also /usr/ports if you are building from ports).

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