Thanks for your suggestions. Also to Mike.
Gmail supports server-side filtering. I suggest you create a filter which moves these messages to a separate IMAP mailbox. You can then base your smart folders on that (including the default Mailing Lists mailbox).
From reading the MailMate docs on the topic (and what I can see in Gmail interface), I was under the impression that Gmail only supported labeling mails, not moving them, which means that they effectively all stays in the inbox. But I will take a closer look, and thanks for the tip on enabling 2.0 features. I'm sure I will find a way to solve this now.
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