Thanks all. 
I have used the solution proposed byt Herbert and Dekel (a combination), and 
it works. I have the number in TOC, but there is no rule I can see declining 
that fact. If they return it back then I will worry about that. So, what I 
did was to number the sections and use 

\renewcommand{\@seccntformat}[1]{}

\renewcommand{\theequation}{\arabic{section}.\arabic{equation}}

in the Latex Preamble.

Thanks alot

Remzi

On Wednesday 14 February 2001 18:46, Dekel Tsur wrote:
> On Wed, Feb 14, 2001 at 10:59:24AM +0000, Remzi Seker wrote:
> > Dear Herbert,
> >
> > Thank you for your help. But to make that command work I have to enable
> > the section numbering and I can not have the section numbers appear in
> > the section (subsection, sub subsection) headings.
> >
> > Any idea how I can have the equation numbers with section numbers but
> > sections headers without numbers? I know it does not make much sense...
> > but graduate school has rules!
>
> Use
>
> \renewcommand{\@seccntformat}[1]{}
>
> You can also use the titlsec package that gives a better control over
> section title appearance.

\renewcommand{\theequation}{\arabic{section}.\arabic{equation}}

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