atm saved preferences end up in my lyx file! is this related to your recent changes bo?
here is a snippet: #LyX 1.5.0svn created this file. For more info see http://www.lyx.org/ \lyxformat 247 \begin_document \begin_header \textclass article \language english \inputencoding auto \font_roman default \font_sans default \font_typewriter default \font_default_family default \font_sc false \font_osf false \font_sf_scale 100 \font_tt_scale 100 \graphics default \paperfontsize default \papersize default \use_geometry false \use_amsmath 1 \cite_engine basic \use_bibtopic false \paperorientation portrait \secnumdepth 3 \tocdepth 3 \paragraph_separation indent \defskip medskip \quotes_language english \papercolumns 1 \papersides 1 \paperpagestyle default \tracking_changes false \output_changes false \end_header
