lib/configure.cmd is a wildly out of date OS/2 file. The patch gets rid of
it and ensures that lib/configure is invoked correctly under Windows.
(Windows doesn't check for '#! /bin/sh' on the first line of the script
and so doesn't recognize it as a shell script.)

OK to apply? To 13x too, Jean-Marc?

-- 
Angus
Index: lib/configure.cmd
===================================================================
RCS file: lib/configure.cmd
diff -N lib/configure.cmd
--- lib/configure.cmd	3 Jan 2001 15:14:48 -0000	1.4
+++ /dev/null	1 Jan 1970 00:00:00 -0000
@@ -1,294 +0,0 @@
-/* OS/2 REXX : The lib/configure.cmd; Don't delete this comment. */

-call RxFuncAdd 'SysLoadFuncs','RexxUtil','SysLoadFuncs'

-call SysLoadFuncs

-env='OS2ENVIRONMENT'

-X11ROOT=value('X11ROOT',,env)

-latex_script='chkconfig.ltx'

-lyxrc_defaults='lyxrc.defaults'

-lyx_check_config='yes'

-rc_fontenc='default'

-

-parse arg option '=' srcdir

-select

-   when option='-h'|option='-help'|option='--help' then do

-  say 'Usage: configure [options]'

-  say 'Options:'

-  say '  --help                   show this help lines'

-  say '  --without-latex-config   do not run LaTeX to determine configuration'

-  exit

-  end

-   when option='--without-latex-config' then

-  lyx_check_config='no'

-   when option='--srcdir' then

-  srcdir=translate(srcdir,'\','/')

-   otherwise

-  nop

-end  /* select */

-if srcdir='' then do

-   parse source 'OS/2 COMMAND ' script

-say 'script =' script

-   srcdir=filespec('drive',script)strip(filespec('path',script),'T','\')

-end

-

-rc=SysFileTree(srcdir'\'latex_script,found,'F')

-if found.0 = 0 then do

-   say "configure: error: cannot find "srcdir'\'latex_script" script"

-   exit 1

-end

-curdir=directory()

-if \(curdir=srcdir) then do

-  call SysFileTree 'layouts', 'found', 'D'

-  if found.0 = 0 then do

-    call SysMkDir 'bind'

-    call SysMkDir 'clipart'

-    call SysMkDir 'doc'

-    call SysMkDir 'examples'

-    call SysMkDir 'images'

-    call SysMkDir 'kbd'

-    call SysMkDir 'layouts'

-    call SysMkDir 'reLyX'

-    call SysMkDir 'scripts'

-    call SysMkDir 'templates'

-    call SysMkDir 'ui'

-  end

-  'cmd /c copy /v' srcdir'\layouts\*.layout layouts'

-  if \(rc=0) then

-    say 'Error! copying layout files.'

-end

-curdir=translate(curdir,'/','\')

-srcdir=translate(srcdir,'/','\')

-A_.0=0

-call SEARCH_PROG 'converter latex dvi%latex $$i|latex2e $$i%"latex"'

-call SEARCH_PROG 'converter latex pdf2%pdflatex $$i|pdflatex2e $$i%"latex"'

-call SEARCH_PROG 'converter latex html%tth -t -e2 -L$$BaseName < $$i > $$o|latex2html -no_subdir -split 0 -show_section_numbers $$i|hevea -s $$i%"originaldir,needaux"'

-call SEARCH_PROG 'converter literate latex%noweave -delay -index $$i > $$o%""'

-call SEARCH_PROG 'converter dvi ps%dvips -o $$o $$i%""'

-call SEARCH_PROG 'converter ps pdf%ps2pdf $$i%""'

-call SEARCH_PROG 'converter ps fax%ksendfax $$i%""'

-/* call SEARCH_PROG 'converter ps tiff%gs -sDEVICE=tiffg3 -sOutputFile=$$o -dNOPAUSE $$i -c quit|gsos2 -sDEVICE=tiffg3 -sOutputFile=$$o -dNOPAUSE $$i -c quit%""' */

-call SEARCH_PROG 'converter linuxdoc lyx%sgml2lyx $$i%""'

-call SEARCH_PROG 'converter linuxdoc latex%sgml2latex $$i%""'

-call SEARCH_PROG 'converter linuxdoc dvi%sgml2latex -o dvi $$i%""'

-call SEARCH_PROG 'converter linuxdoc html%sgml2html $$i%""'

-call SEARCH_PROG 'converter docbook dvi%sgmltools -b dvi $$i|db2dvi $$i%""'

-call SEARCH_PROG 'converter docbook html%sgmltools -b html $$i|db2html $$i%""'

-A_.0=A_.0+1;i=A_.0

-A_.i=''

-call SEARCH_PROG 'converter latex lyx%reLyX -f $$i%""'

-call SEARCH_PROG 'converter literate lyx%noweb2lyx $$i $$o%""'

-call SEARCH_PROG 'converter html latex%html2latex $$i%""'

-call SEARCH_PROG 'converter word latex%wvCleanLatex $$i $$o|word2x -f latex $$i%""'

-A_.0=A_.0+1;i=A_.0

-A_.i=''

-call SEARCH_PROG 'converter gif eps%convert $$i $$o%""'

-call SEARCH_PROG 'converter png eps%convert $$i $$o%""'

-call SEARCH_PROG 'converter jpg eps%convert $$i $$o%""'

-call SEARCH_PROG 'converter gif png%convert $$i $$o%""'

-A_.0=A_.0+1;i=A_.0

-A_.i=''

-call SEARCH_PROG 'viewer dvi%xdvi'

-call SEARCH_PROG 'viewer html%netscape'

-call SEARCH_PROG 'viewer pdf%xpdf gv ghostview acroread'

-call SEARCH_PROG 'viewer ps%gv -swap|ghostview -swap|gvpm -swap'

-call SEARCH_PROG 'viewer eps%gv|ghostview|gvpm'

-A_.0=A_.0+1;i=A_.0

-A_.i=''

-call SEARCH_PROG 'ps_command%gs|gsos2'

-call SEARCH_PROG 'ascii_roff_command%groff -t -Tlatin1 $$i'

-call SEARCH_PROG 'chktex_command%chktex -n1 -n3 -n6 -n9 -n22 -n25 -n30 -n38'

-call SEARCH_PROG 'spell_command%ispell'

-/* call SEARCH_PROG 'fax_command%fsend -p$$Phone -i$$i -d$$Name -m$$Comment' */

-call SEARCH_PROG 'print_spool_command%lp|lpr'

-i=A_.0;A_.0=A_.0+1

-if pos('lpr',A_.i)>0 then

-  do

-    i=i+1

-    A_.i='print_spool_printerprefix "-P"'

-  end

-else

-  do

-    i=i+1

-    A_.i='print_spool_printerprefix "-d "'

-  end

-/* call SysFileTree 'reLyX\reLyX.cmd', 'found', 'F' */

-/* $ChkLaTeX

-\nonstopmode\makeatletter

-\ifx\undefined\documentclass\else

-  \message{ThisIsLaTeX2e}

-\fi

-\@@end

- EOF */

-call WRITE_FILE 'chklatex.ltx' '$ChkLaTeX'

-'cmd /c 'LATEX' chklatex.ltx>nul'

-call SysFileSearch 'NotLaTeX2e', 'chklatex.log', chklatex

-if chklatex.0 > 0 then LATEX=''

-

-rc=SysFileDelete('textclass.lst')

-rc=SysFileDelete('packages.lst')

-rc=SysFileDelete('chkconfig.sed')

-if \(lyx_check_config='no') then

-do

-  rc=SysFileTree(srcdir'\layouts\*.layout',found,'FO')

-  rc=SysFileDelete('chklayouts.tex')

-  rc=SysFileDelete('chkconfig.vars')

-  if found.0>0 then

-    do num=1 to found.0

-      parse value filespec('name',found.num) with DocClass '.layout'

-      parse value DocClass with mainClass '_' subClass

-      if ''=subClass then

-        rc=lineout('chklayouts.tex','\TestDocClass{'DocClass'}')

-      else	/* Not used, or must be empty? */

-        rc=lineout('chklayouts.tex','\TestDocClass['mainClass'.cls]{'DocClass'}')

-    end

-  rc=lineout('chklayouts.tex')

-  sgmltools_cmd=''

-  chk_sgmltools='no'

-  if SGMLTOOLS='sgml2lyx' then

-   do

-    chk_sgmltools='yes'

-    sgmltools_cmd='\def\hassgmltools{}'

-   end

-  rc=SysFileDelete('wrap_chkconfig.ltx')

-  rc=lineout('wrap_chkconfig.ltx','\newcommand\srcdir{'srcdir'}')

-  rc=lineout('wrap_chkconfig.ltx',sgmltools_cmd)

-  rc=lineout('wrap_chkconfig.ltx','\input{'srcdir'/chkconfig.ltx}')

-  rc=lineout('wrap_chkconfig.ltx')

-  'cmd /c 'LATEX' wrap_chkconfig.ltx'

-  size=stream('chkconfig.sed','c','query size')

-  rc=stream('chkconfig.sed','c','open')

-  if rxfuncquery(SysAddRexxMacro) then

-    rc=stream('chkconfig.sed','c','seek +'size)

-  else

-    rc=stream('chkconfig.sed','c','seek + 'size' write')

-  rc=lineout('chkconfig.sed','s/@chk_sgmltools@/'chk_sgmltools'/g')

-  rc=lineout('chkconfig.sed')

-  call SysFileSearch 'chk_fontenc=', 'chkconfig.vars', fontenc

-  if fontenc.0 > 0 then parse var fontenc.1 chk"='"rc_fontenc"'"

-end

-

-call SysFileTree 'textclass.lst', 'file', 'FO'

-if file.0=0 then

-do

-/* $TextClass

-# This file declares layouts and their associated definition files

-# (include dir. relative to the place where this file is).

-# It contains only default values, since chkconfig.ltx could not be run

-# for some reason. Run ./configure if you need to update it after a

-# configuration change.

-"article"	"article"	"article"

-"report"	"report"	"report"

-"book"	"book"	"book"

-"linuxdoc"	"linuxdoc"	"linuxdoc"

-"letter"	"letter"	"letter"

- EOF */

-  call WRITE_FILE 'textclass.lst' '$TextClass'

-  rc=lineout('chkconfig.sed','s/@.*@/???/g')

-  rc=lineout('chkconfig.sed')

-  rc_graphics='none'

-end

-

-call SysFileTree 'chkconfig.sed', 'file', 'FO'

-if file.0=0 then

-do

-   rc=lineout('chkconfig.sed','s/@.*@/???/g')

-   rc=lineout('chkconfig.sed')

-end

-

-call SysFileTree 'packages.lst', 'file', 'FO'

-if file.0=0 then

-do

-/* $Packages

-# This file should contain the list of LaTeX packages that have been

-# recognized by LyX. Unfortunately, since configure could not find

-# your LaTeX2e program, the tests have not been run. Run configure

-# if you need to update it after a configuration change.

- EOF */

-  call WRITE_FILE 'packages.lst' '$Packages'

-end

-

-say 'creating doc/LaTeXConfig.lyx'

-'sed -f chkconfig.sed 'srcdir'/doc/LaTeXConfig.lyx.in >doc\LaTeXConfig.lyx'

-call SysFileDelete 'chkconfig.sed'

-call SysFileDelete 'chkconfig.vars'

-call SysFileDelete 'wrap_chkconfig.ltx'

-call SysFileDelete 'wrap_chkconfig.log'

-call SysFileDelete 'chklatex.ltx'

-call SysFileDelete 'chklatex.log'

-call SysFileDelete 'chklayouts.tex'

-call SysFileDelete 'missfont.log'

-

-say 'creating 'lyxrc_defaults

-if rxfuncquery(SysAddRexxMacro) then

-  rc=stream(lyxrc_defaults,'c','seek =0')

-rc=SysFileDelete(X11ROOT'\XFree86\bin\fsend2.cmd')

-/* $LyXRC_Default

-# This file has been automatically generated by LyX' lib/configure

-# script. It contains default settings that have been determined by

-# examining your system. PLEASE DO NOT MODIFY ANYTHING HERE! If you

-# want to customize LyX, make a copy of the file LYXDIR/lyxrc as

-# ~/.lyx/lyxrc and edit this file instead. Any setting in lyxrc will

-# override the values given here.

-\Format text      txt   ASCII           A

-\Format textparagraph txt ASCII(paragraphs)     ""

-\Format docbook  sgml   DocBook         B

-\Format dvi       dvi   DVI             D

-\Format eps       eps   EPS             ""

-\Format fax       ""    Fax             ""

-\Format gif      gif    GIF             ""

-\Format html      html  HTML            H

-\Format jpg      jpg    JPEG            ""

-\Format latex     tex   LaTeX           L

-\Format linuxdoc sgml   LinuxDoc        x

-\Format lyx      lyx    LyX             ""

-\Format literate nw     NoWeb           N

-\Format pdf       pdf   PDF             P

-\Format pdf2      pdf  "PDF (pdflatex)" F

-\Format png       png   PNG             ""

-\Format ps        ps    Postscript      t

-\Format program  ""     Program         ""

-\Format word      doc   Word            W

-

-

- EOF */

-call WRITE_FILE lyxrc_defaults '$LyXRC_Default'

-A_.0=A_.0+1;i=A_.0

-A_.i='font_encoding "'||rc_fontenc||'"'

-do i=1 to A_.0

-  if A_.i\='' then A_.i='\'||A_.i

-  call lineout lyxrc_defaults,A_.i

-end

-call lineout lyxrc_defaults

-call lineout script

-exit

-

-SEARCH_PROG: procedure expose A_.

-parse arg LABEL '%' COMMANDS '%' ROUTE

-  i=A_.0+1

-  A_.0=i

-  A_.i=LABEL||' "none" '||ROUTE

-  do while COMMANDS\=''

-    parse value COMMANDS with COMMAND '|' COMMANDS

-    parse upper value COMMAND with CMD  ARGV

-    if (\(''=SysSearchPath('PATH',CMD||'.EXE'))|\(''=SysSearchPath('PATH',CMD||'.CMD'))) then

-    do

-      A_.i=LABEL||' "'||COMMAND||'" '||ROUTE

-      COMMANDS=''

-    end

-  end

-return

-

-WRITE_FILE: procedure expose script

-parse arg FILE TAG

-call SysFileDelete FILE

-C_=''

-do while pos(TAG,C_)=0

-  C_=linein(script)

-end

-C_=linein(script)

-do while pos('EOF',C_)=0

-  call lineout FILE,C_

-  C_=linein(script)

-end

-call lineout FILE

-/*call lineout script*/

-return

Index: src/lyx_cb.C
===================================================================
RCS file: /usr/local/lyx/cvsroot/lyx-devel/src/lyx_cb.C,v
retrieving revision 1.190
diff -u -p -r1.190 lyx_cb.C
--- src/lyx_cb.C	23 Jan 2003 16:23:37 -0000	1.190
+++ src/lyx_cb.C	3 Jan 2005 20:47:31 -0000
@@ -530,9 +530,10 @@ void Reconfigure(BufferView * bv)
 
 	// Run configure in user lyx directory
 	Path p(user_lyxdir);
+	string const configure_script = AddName(system_lyxdir, "configure");
+	string const configure_command = "sh " + QuoteName(configure_script);
 	Systemcall one;
-	one.startscript(Systemcall::Wait,
-			AddName(system_lyxdir, "configure"));
+	one.startscript(Systemcall::Wait, configure_command);
 	p.pop();
 	bv->owner()->message(_("Reloading configuration..."));
 	lyxrc.read(LibFileSearch(string(), "lyxrc.defaults"));
Index: src/lyx_main.C
===================================================================
RCS file: /usr/local/lyx/cvsroot/lyx-devel/src/lyx_main.C,v
retrieving revision 1.134.2.6
diff -u -p -r1.134.2.6 lyx_main.C
--- src/lyx_main.C	20 Dec 2004 16:59:00 -0000	1.134.2.6
+++ src/lyx_main.C	3 Jan 2005 20:47:32 -0000
@@ -625,6 +625,7 @@ void LyX::deadKeyBindings(kb_keymap * kb
 void LyX::queryUserLyXDir(bool explicit_userdir)
 {
 	string const configure_script = AddName(system_lyxdir, "configure");
+	string const configure_command = "sh " + QuoteName(configure_script);
 
 	// Does user directory exist?
 	FileInfo fileInfo(user_lyxdir);
@@ -637,7 +638,7 @@ void LyX::queryUserLyXDir(bool explicit_
 			lyxerr << _("LyX: reconfiguring user directory")
 			       << endl;
 			Path p(user_lyxdir);
-			::system(configure_script.c_str());
+			::system(configure_command.c_str());
 			lyxerr << "LyX: " << _("Done!") << endl;
 		}
 		return;
@@ -685,7 +686,7 @@ void LyX::queryUserLyXDir(bool explicit_
 
 	// Run configure in user lyx directory
 	Path p(user_lyxdir);
-	::system(configure_script.c_str());
+	::system(configure_command.c_str());
 	lyxerr << "LyX: " << _("Done!") << endl;
 }
 
Index: lib/configure.cmd
===================================================================
RCS file: lib/configure.cmd
diff -N lib/configure.cmd
--- lib/configure.cmd	3 Jan 2001 15:14:48 -0000	1.4
+++ /dev/null	1 Jan 1970 00:00:00 -0000
@@ -1,294 +0,0 @@
-/* OS/2 REXX : The lib/configure.cmd; Don't delete this comment. */

-call RxFuncAdd 'SysLoadFuncs','RexxUtil','SysLoadFuncs'

-call SysLoadFuncs

-env='OS2ENVIRONMENT'

-X11ROOT=value('X11ROOT',,env)

-latex_script='chkconfig.ltx'

-lyxrc_defaults='lyxrc.defaults'

-lyx_check_config='yes'

-rc_fontenc='default'

-

-parse arg option '=' srcdir

-select

-   when option='-h'|option='-help'|option='--help' then do

-  say 'Usage: configure [options]'

-  say 'Options:'

-  say '  --help                   show this help lines'

-  say '  --without-latex-config   do not run LaTeX to determine configuration'

-  exit

-  end

-   when option='--without-latex-config' then

-  lyx_check_config='no'

-   when option='--srcdir' then

-  srcdir=translate(srcdir,'\','/')

-   otherwise

-  nop

-end  /* select */

-if srcdir='' then do

-   parse source 'OS/2 COMMAND ' script

-say 'script =' script

-   srcdir=filespec('drive',script)strip(filespec('path',script),'T','\')

-end

-

-rc=SysFileTree(srcdir'\'latex_script,found,'F')

-if found.0 = 0 then do

-   say "configure: error: cannot find "srcdir'\'latex_script" script"

-   exit 1

-end

-curdir=directory()

-if \(curdir=srcdir) then do

-  call SysFileTree 'layouts', 'found', 'D'

-  if found.0 = 0 then do

-    call SysMkDir 'bind'

-    call SysMkDir 'clipart'

-    call SysMkDir 'doc'

-    call SysMkDir 'examples'

-    call SysMkDir 'images'

-    call SysMkDir 'kbd'

-    call SysMkDir 'layouts'

-    call SysMkDir 'reLyX'

-    call SysMkDir 'scripts'

-    call SysMkDir 'templates'

-    call SysMkDir 'ui'

-  end

-  'cmd /c copy /v' srcdir'\layouts\*.layout layouts'

-  if \(rc=0) then

-    say 'Error! copying layout files.'

-end

-curdir=translate(curdir,'/','\')

-srcdir=translate(srcdir,'/','\')

-A_.0=0

-call SEARCH_PROG 'converter latex dvi%latex $$i|latex2e $$i%"latex"'

-call SEARCH_PROG 'converter latex pdf2%pdflatex $$i|pdflatex2e $$i%"latex"'

-call SEARCH_PROG 'converter latex html%tth -t -e2 -L$$BaseName < $$i > $$o|latex2html -no_subdir -split 0 -show_section_numbers $$i|hevea -s $$i%"originaldir,needaux"'

-call SEARCH_PROG 'converter literate latex%noweave -delay -index $$i > $$o%""'

-call SEARCH_PROG 'converter dvi ps%dvips -o $$o $$i%""'

-call SEARCH_PROG 'converter ps pdf%ps2pdf $$i%""'

-call SEARCH_PROG 'converter ps fax%ksendfax $$i%""'

-/* call SEARCH_PROG 'converter ps tiff%gs -sDEVICE=tiffg3 -sOutputFile=$$o -dNOPAUSE $$i -c quit|gsos2 -sDEVICE=tiffg3 -sOutputFile=$$o -dNOPAUSE $$i -c quit%""' */

-call SEARCH_PROG 'converter linuxdoc lyx%sgml2lyx $$i%""'

-call SEARCH_PROG 'converter linuxdoc latex%sgml2latex $$i%""'

-call SEARCH_PROG 'converter linuxdoc dvi%sgml2latex -o dvi $$i%""'

-call SEARCH_PROG 'converter linuxdoc html%sgml2html $$i%""'

-call SEARCH_PROG 'converter docbook dvi%sgmltools -b dvi $$i|db2dvi $$i%""'

-call SEARCH_PROG 'converter docbook html%sgmltools -b html $$i|db2html $$i%""'

-A_.0=A_.0+1;i=A_.0

-A_.i=''

-call SEARCH_PROG 'converter latex lyx%reLyX -f $$i%""'

-call SEARCH_PROG 'converter literate lyx%noweb2lyx $$i $$o%""'

-call SEARCH_PROG 'converter html latex%html2latex $$i%""'

-call SEARCH_PROG 'converter word latex%wvCleanLatex $$i $$o|word2x -f latex $$i%""'

-A_.0=A_.0+1;i=A_.0

-A_.i=''

-call SEARCH_PROG 'converter gif eps%convert $$i $$o%""'

-call SEARCH_PROG 'converter png eps%convert $$i $$o%""'

-call SEARCH_PROG 'converter jpg eps%convert $$i $$o%""'

-call SEARCH_PROG 'converter gif png%convert $$i $$o%""'

-A_.0=A_.0+1;i=A_.0

-A_.i=''

-call SEARCH_PROG 'viewer dvi%xdvi'

-call SEARCH_PROG 'viewer html%netscape'

-call SEARCH_PROG 'viewer pdf%xpdf gv ghostview acroread'

-call SEARCH_PROG 'viewer ps%gv -swap|ghostview -swap|gvpm -swap'

-call SEARCH_PROG 'viewer eps%gv|ghostview|gvpm'

-A_.0=A_.0+1;i=A_.0

-A_.i=''

-call SEARCH_PROG 'ps_command%gs|gsos2'

-call SEARCH_PROG 'ascii_roff_command%groff -t -Tlatin1 $$i'

-call SEARCH_PROG 'chktex_command%chktex -n1 -n3 -n6 -n9 -n22 -n25 -n30 -n38'

-call SEARCH_PROG 'spell_command%ispell'

-/* call SEARCH_PROG 'fax_command%fsend -p$$Phone -i$$i -d$$Name -m$$Comment' */

-call SEARCH_PROG 'print_spool_command%lp|lpr'

-i=A_.0;A_.0=A_.0+1

-if pos('lpr',A_.i)>0 then

-  do

-    i=i+1

-    A_.i='print_spool_printerprefix "-P"'

-  end

-else

-  do

-    i=i+1

-    A_.i='print_spool_printerprefix "-d "'

-  end

-/* call SysFileTree 'reLyX\reLyX.cmd', 'found', 'F' */

-/* $ChkLaTeX

-\nonstopmode\makeatletter

-\ifx\undefined\documentclass\else

-  \message{ThisIsLaTeX2e}

-\fi

-\@@end

- EOF */

-call WRITE_FILE 'chklatex.ltx' '$ChkLaTeX'

-'cmd /c 'LATEX' chklatex.ltx>nul'

-call SysFileSearch 'NotLaTeX2e', 'chklatex.log', chklatex

-if chklatex.0 > 0 then LATEX=''

-

-rc=SysFileDelete('textclass.lst')

-rc=SysFileDelete('packages.lst')

-rc=SysFileDelete('chkconfig.sed')

-if \(lyx_check_config='no') then

-do

-  rc=SysFileTree(srcdir'\layouts\*.layout',found,'FO')

-  rc=SysFileDelete('chklayouts.tex')

-  rc=SysFileDelete('chkconfig.vars')

-  if found.0>0 then

-    do num=1 to found.0

-      parse value filespec('name',found.num) with DocClass '.layout'

-      parse value DocClass with mainClass '_' subClass

-      if ''=subClass then

-        rc=lineout('chklayouts.tex','\TestDocClass{'DocClass'}')

-      else	/* Not used, or must be empty? */

-        rc=lineout('chklayouts.tex','\TestDocClass['mainClass'.cls]{'DocClass'}')

-    end

-  rc=lineout('chklayouts.tex')

-  sgmltools_cmd=''

-  chk_sgmltools='no'

-  if SGMLTOOLS='sgml2lyx' then

-   do

-    chk_sgmltools='yes'

-    sgmltools_cmd='\def\hassgmltools{}'

-   end

-  rc=SysFileDelete('wrap_chkconfig.ltx')

-  rc=lineout('wrap_chkconfig.ltx','\newcommand\srcdir{'srcdir'}')

-  rc=lineout('wrap_chkconfig.ltx',sgmltools_cmd)

-  rc=lineout('wrap_chkconfig.ltx','\input{'srcdir'/chkconfig.ltx}')

-  rc=lineout('wrap_chkconfig.ltx')

-  'cmd /c 'LATEX' wrap_chkconfig.ltx'

-  size=stream('chkconfig.sed','c','query size')

-  rc=stream('chkconfig.sed','c','open')

-  if rxfuncquery(SysAddRexxMacro) then

-    rc=stream('chkconfig.sed','c','seek +'size)

-  else

-    rc=stream('chkconfig.sed','c','seek + 'size' write')

-  rc=lineout('chkconfig.sed','s/@chk_sgmltools@/'chk_sgmltools'/g')

-  rc=lineout('chkconfig.sed')

-  call SysFileSearch 'chk_fontenc=', 'chkconfig.vars', fontenc

-  if fontenc.0 > 0 then parse var fontenc.1 chk"='"rc_fontenc"'"

-end

-

-call SysFileTree 'textclass.lst', 'file', 'FO'

-if file.0=0 then

-do

-/* $TextClass

-# This file declares layouts and their associated definition files

-# (include dir. relative to the place where this file is).

-# It contains only default values, since chkconfig.ltx could not be run

-# for some reason. Run ./configure if you need to update it after a

-# configuration change.

-"article"	"article"	"article"

-"report"	"report"	"report"

-"book"	"book"	"book"

-"linuxdoc"	"linuxdoc"	"linuxdoc"

-"letter"	"letter"	"letter"

- EOF */

-  call WRITE_FILE 'textclass.lst' '$TextClass'

-  rc=lineout('chkconfig.sed','s/@.*@/???/g')

-  rc=lineout('chkconfig.sed')

-  rc_graphics='none'

-end

-

-call SysFileTree 'chkconfig.sed', 'file', 'FO'

-if file.0=0 then

-do

-   rc=lineout('chkconfig.sed','s/@.*@/???/g')

-   rc=lineout('chkconfig.sed')

-end

-

-call SysFileTree 'packages.lst', 'file', 'FO'

-if file.0=0 then

-do

-/* $Packages

-# This file should contain the list of LaTeX packages that have been

-# recognized by LyX. Unfortunately, since configure could not find

-# your LaTeX2e program, the tests have not been run. Run configure

-# if you need to update it after a configuration change.

- EOF */

-  call WRITE_FILE 'packages.lst' '$Packages'

-end

-

-say 'creating doc/LaTeXConfig.lyx'

-'sed -f chkconfig.sed 'srcdir'/doc/LaTeXConfig.lyx.in >doc\LaTeXConfig.lyx'

-call SysFileDelete 'chkconfig.sed'

-call SysFileDelete 'chkconfig.vars'

-call SysFileDelete 'wrap_chkconfig.ltx'

-call SysFileDelete 'wrap_chkconfig.log'

-call SysFileDelete 'chklatex.ltx'

-call SysFileDelete 'chklatex.log'

-call SysFileDelete 'chklayouts.tex'

-call SysFileDelete 'missfont.log'

-

-say 'creating 'lyxrc_defaults

-if rxfuncquery(SysAddRexxMacro) then

-  rc=stream(lyxrc_defaults,'c','seek =0')

-rc=SysFileDelete(X11ROOT'\XFree86\bin\fsend2.cmd')

-/* $LyXRC_Default

-# This file has been automatically generated by LyX' lib/configure

-# script. It contains default settings that have been determined by

-# examining your system. PLEASE DO NOT MODIFY ANYTHING HERE! If you

-# want to customize LyX, make a copy of the file LYXDIR/lyxrc as

-# ~/.lyx/lyxrc and edit this file instead. Any setting in lyxrc will

-# override the values given here.

-\Format text      txt   ASCII           A

-\Format textparagraph txt ASCII(paragraphs)     ""

-\Format docbook  sgml   DocBook         B

-\Format dvi       dvi   DVI             D

-\Format eps       eps   EPS             ""

-\Format fax       ""    Fax             ""

-\Format gif      gif    GIF             ""

-\Format html      html  HTML            H

-\Format jpg      jpg    JPEG            ""

-\Format latex     tex   LaTeX           L

-\Format linuxdoc sgml   LinuxDoc        x

-\Format lyx      lyx    LyX             ""

-\Format literate nw     NoWeb           N

-\Format pdf       pdf   PDF             P

-\Format pdf2      pdf  "PDF (pdflatex)" F

-\Format png       png   PNG             ""

-\Format ps        ps    Postscript      t

-\Format program  ""     Program         ""

-\Format word      doc   Word            W

-

-

- EOF */

-call WRITE_FILE lyxrc_defaults '$LyXRC_Default'

-A_.0=A_.0+1;i=A_.0

-A_.i='font_encoding "'||rc_fontenc||'"'

-do i=1 to A_.0

-  if A_.i\='' then A_.i='\'||A_.i

-  call lineout lyxrc_defaults,A_.i

-end

-call lineout lyxrc_defaults

-call lineout script

-exit

-

-SEARCH_PROG: procedure expose A_.

-parse arg LABEL '%' COMMANDS '%' ROUTE

-  i=A_.0+1

-  A_.0=i

-  A_.i=LABEL||' "none" '||ROUTE

-  do while COMMANDS\=''

-    parse value COMMANDS with COMMAND '|' COMMANDS

-    parse upper value COMMAND with CMD  ARGV

-    if (\(''=SysSearchPath('PATH',CMD||'.EXE'))|\(''=SysSearchPath('PATH',CMD||'.CMD'))) then

-    do

-      A_.i=LABEL||' "'||COMMAND||'" '||ROUTE

-      COMMANDS=''

-    end

-  end

-return

-

-WRITE_FILE: procedure expose script

-parse arg FILE TAG

-call SysFileDelete FILE

-C_=''

-do while pos(TAG,C_)=0

-  C_=linein(script)

-end

-C_=linein(script)

-do while pos('EOF',C_)=0

-  call lineout FILE,C_

-  C_=linein(script)

-end

-call lineout FILE

-/*call lineout script*/

-return

Index: src/lyx_cb.C
===================================================================
RCS file: /usr/local/lyx/cvsroot/lyx-devel/src/lyx_cb.C,v
retrieving revision 1.243
diff -u -p -r1.243 lyx_cb.C
--- src/lyx_cb.C	25 Nov 2004 11:08:28 -0000	1.243
+++ src/lyx_cb.C	3 Jan 2005 20:49:23 -0000
@@ -445,9 +445,10 @@ void Reconfigure(BufferView * bv)
 
 	// Run configure in user lyx directory
 	Path p(user_lyxdir());
+	string const configure_script = AddName(system_lyxdir, "configure");
+	string const configure_command = "sh " + QuoteName(configure_script);
 	Systemcall one;
-	one.startscript(Systemcall::Wait,
-			QuoteName(AddName(system_lyxdir(), "configure")));
+	one.startscript(Systemcall::Wait, configure_command);
 	p.pop();
 	bv->owner()->message(_("Reloading configuration..."));
 	lyxrc.read(LibFileSearch(string(), "lyxrc.defaults"));
Index: src/lyx_main.C
===================================================================
RCS file: /usr/local/lyx/cvsroot/lyx-devel/src/lyx_main.C,v
retrieving revision 1.189
diff -u -p -r1.189 lyx_main.C
--- src/lyx_main.C	16 Dec 2004 14:53:58 -0000	1.189
+++ src/lyx_main.C	3 Jan 2005 20:49:25 -0000
@@ -528,6 +528,7 @@ void LyX::deadKeyBindings(kb_keymap * kb
 void LyX::queryUserLyXDir(bool explicit_userdir)
 {
 	string const configure_script = AddName(system_lyxdir(), "configure");
+	string const configure_command = "sh " + QuoteName(configure_script);
 
 	// Does user directory exist?
 	FileInfo fileInfo(user_lyxdir());
@@ -540,7 +541,7 @@ void LyX::queryUserLyXDir(bool explicit_
 			lyxerr << _("LyX: reconfiguring user directory")
 			       << endl;
 			Path p(user_lyxdir());
-			::system(configure_script.c_str());
+			::system(configure_command.c_str());
 			lyxerr << "LyX: " << _("Done!") << endl;
 		}
 		return;
@@ -561,7 +562,7 @@ void LyX::queryUserLyXDir(bool explicit_
 
 	// Run configure in user lyx directory
 	Path p(user_lyxdir());
-	::system(configure_script.c_str());
+	::system(configure_command.c_str());
 	lyxerr << "LyX: " << _("Done!") << endl;
 }
 

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