I can't remember if this is the same in lyx 1.5 or not as I don't use it often, but with 1.6.0beta3 (texlive-latex-2007), my "formatted reference" is missing the "Section" prefix (only "1.2.3.4" rather than "Section 1.2.3.4"). "Figures" are alright though. Is the behavior normal?
