> I'm not familiar enough with the tty code to decide what the proper fix 
> should 
> be. I'll try to write a patch if someone could point me in the right 
> direction.

Something like this perhaps ?

diff -u --new-file --recursive --exclude-from /usr/src/exclude 
linux.vanilla-2.6.23rc1-mm1/drivers/char/tty_io.c 
linux-2.6.23rc1-mm1/drivers/char/tty_io.c
--- linux.vanilla-2.6.23rc1-mm1/drivers/char/tty_io.c   2007-07-26 
15:02:57.000000000 +0100
+++ linux-2.6.23rc1-mm1/drivers/char/tty_io.c   2007-08-08 11:39:29.791433672 
+0100
@@ -369,25 +369,50 @@
 }
 
 /**
- *     tty_buffer_flush                -       flush full tty buffers
+ *     __tty_buffer_flush              -       flush full tty buffers
  *     @tty: tty to flush
  *
- *     flush all the buffers containing receive data
+ *     flush all the buffers containing receive data. Caller must
+ *     hold the buffer lock and must have ensured no parallel flush to
+ *     ldisc is running.
  *
  *     Locking: none
  */
 
-static void tty_buffer_flush(struct tty_struct *tty)
+static void __tty_buffer_flush(struct tty_struct *tty)
 {
        struct tty_buffer *thead;
-       unsigned long flags;
 
-       spin_lock_irqsave(&tty->buf.lock, flags);
        while((thead = tty->buf.head) != NULL) {
                tty->buf.head = thead->next;
                tty_buffer_free(tty, thead);
        }
        tty->buf.tail = NULL;
+}
+
+/**
+ *     tty_buffer_flush                -       flush full tty buffers
+ *     @tty: tty to flush
+ *
+ *     flush all the buffers containing receive data. If the buffer is
+ *     being processed by flush_to_ldisc then we defer the processing
+ *     to that function
+ *
+ *     Locking: none
+ */
+ 
+static void tty_buffer_flush(struct tty_struct *tty)
+{
+       unsigned long flags;
+       spin_lock_irqsave(&tty->buf.lock, flags);
+       
+       /* If the data is being pushed to the tty layer then we can't
+          process it here. Instead set a flag and the flush_to_ldisc
+          path will process the flush request before it exits */
+       if (tty->buf.flushing)
+               tty->buf.flushpending = 1;
+       else
+               __tty_buffer_flush(tty);
        spin_unlock_irqrestore(&tty->buf.lock, flags);
 }
 
@@ -3594,6 +3619,7 @@
                return;
 
        spin_lock_irqsave(&tty->buf.lock, flags);
+       tty->buf.flushing = 1;  /* So we know for tty_flush_buffers */
        head = tty->buf.head;
        if (head != NULL) {
                tty->buf.head = NULL;
@@ -3607,6 +3633,11 @@
                                tty_buffer_free(tty, tbuf);
                                continue;
                        }
+                       /* Ldisc or user is trying to flush the buffers
+                          we are feeding to the ldisc, stop feeding the 
+                          line discipline as we want to empty the queue */
+                       if (tty->buf.flushpending)
+                               break;
                        if (!tty->receive_room) {
                                schedule_delayed_work(&tty->buf.work, 1);
                                break;
@@ -3620,8 +3651,16 @@
                        disc->receive_buf(tty, char_buf, flag_buf, count);
                        spin_lock_irqsave(&tty->buf.lock, flags);
                }
+               /* Restore the queue head */
                tty->buf.head = head;
+               /* We may have a deferred request to flush the input buffer,
+                  if so do it now under the lock and empty the queue */
+               if (tty->buf.flushpending) {
+                       __tty_buffer_flush(tty);
+                       tty->buf.flushpending = 0;
+               }
        }
+       tty->buf.flushing = 0;
        spin_unlock_irqrestore(&tty->buf.lock, flags);
 
        tty_ldisc_deref(disc);
diff -u --new-file --recursive --exclude-from /usr/src/exclude 
linux.vanilla-2.6.23rc1-mm1/include/linux/tty.h 
linux-2.6.23rc1-mm1/include/linux/tty.h
--- linux.vanilla-2.6.23rc1-mm1/include/linux/tty.h     2007-07-26 
15:02:04.000000000 +0100
+++ linux-2.6.23rc1-mm1/include/linux/tty.h     2007-08-08 11:44:32.000000000 
+0100
@@ -80,13 +73,10 @@
        struct tty_buffer *tail;        /* Active buffer */
        struct tty_buffer *free;        /* Free queue head */
        int memory_used;                /* Buffer space used excluding free 
queue */
+       unsigned int flushing:1;        /* flush_to_ldisc active */
+       unsigned int flushpending:1;    /* A request to clear the queue is 
pending */
 };
 /*
- * The pty uses char_buf and flag_buf as a contiguous buffer
- */
-#define PTY_BUF_SIZE   4*TTY_FLIPBUF_SIZE
-
-/*
  * When a break, frame error, or parity error happens, these codes are
  * stuffed into the flags buffer.
  */
-
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