Howdy all! I am a programmer for the netCDF package, an open source scientific data package widely used in weather and climate research.
The latest version of netCDF is having a problem with intel compilers, when using the MPI library (which, annoyingly, has a wrapper script around the compiler.) The daily snapshot of the netCDF library is here: ftp://ftp.unidata.ucar.edu/pub/netcdf/snapshot/netcdf-4-daily.tar.gz There are two failure modes. One happens on make install (after make check completes successfully), and the other happens in make check. Libtool then seems to issue a command to ifort that makes no sense. The output for the make check case looks like this: make[2]: Entering directory `/data/kb/compile/netcdf-4.1.3-rc1-snapshot2011052320/fortran' /bin/bash ../libtool --tag=FC --mode=link mpif90 -g -version-number 5:1:0 -L/opt/hdf5-par/lib -o libnetcdff.la -rpath /opt/netcdf-4.1.3-rc1-snapshot2011052320_IFORT-par/lib fort-attio.lo fort-control.lo fort-dim.lo fort-genatt.lo fort-geninq.lo fort-genvar.lo fort-lib.lo fort-misc.lo fort-v2compat.lo fort-vario.lo fort-var1io.lo fort-varaio.lo fort-varmio.lo fort-varsio.lo fort-nc4.lo ../liblib/libnetcdf.la ../f90/libnetcdff90.la -lm -lhdf5_hl -lhdf5 -lz -lm libtool: link: mpif90 -shared .libs/fort-attio.o .libs/fort-control.o .libs/fort-dim.o .libs/fort-genatt.o .libs/fort-geninq.o .libs/fort-genvar.o .libs/fort-lib.o .libs/fort-misc.o .libs/fort-v2compat.o .libs/fort-vario.o .libs/fort-var1io.o .libs/fort-varaio.o .libs/fort-varmio.o .libs/fort-varsio.o .libs/fort-nc4.o --whole-archive ../f90/.libs/libnetcdff90.a --no-whole-archive -rpath /data/kb/compile/netcdf-4.1.3-rc1-snapshot2011052320/liblib/.libs -rpath /opt/netcdf-4.1.3-rc1-snapshot2011052320_IFORT-par/lib -L/opt/hdf5-par/lib ../liblib/.libs/libnetcdf.so -L/usr/lib /usr/lib/libcurl-gnutls.so /opt/hdf5-1.8.6-par/lib/libhdf5_hl.a /opt/hdf5-1.8.6-par/lib/libhdf5.a -lz -L/opt/mpich2-1.3.2p1-romio/lib -L/data/opt/intel/composerxe-2011.2.137/compiler/lib/ia32 -L/data/opt/intel/composerxe-2011.2.137/mkl/lib/ia32 -L/usr/lib/gcc/i686-linux-gnu/4.4.5/ -L/usr/lib/gcc/i686-linux-gnu/4.4.5/../../../../lib/ -L/lib/../lib/ -L/usr/lib/../lib/ -L/data/opt/intel/composerxe-2011.2.137/compiler/lib/ia32/ -L/data/opt/intel/composerxe-2011.2.137/mkl/lib/ia32/ -L/usr/lib/gcc/i686-linux-gnu/4.4.5/../../../ -L/lib/ -L/usr/lib/ -L/usr/lib/i686-linux-gnu -lmpichf90 -lmpich /opt/mpich2-1.3.2p1-romio/lib/libopa.a /opt/mpich2-1.3.2p1-romio/lib/libmpl.a -lrt -lpthread -lifport -lifcore -limf -lsvml -lm -lipgo_pic -lintlc -lgcc_s -lirc_s -ldl -lc -soname libnetcdff.so.5 -o .libs/libnetcdff.so.5.1.0 ifort: command line warning #10006: ignoring unknown option '-fwhole-archive' ifort: command line warning #10006: ignoring unknown option '-fno-whole-archive' ifort: command line warning #10156: ignoring option '-r'; no argument required ifort: command line warning #10156: ignoring option '-r'; no argument required ifort: error #10236: File not found: '/opt/netcdf-4.1.3-rc1-snapshot2011052320_IFORT-par/lib' The output for the make install case looks like this: > libtool: relink: ifort -shared -nofor_main .libs/fort-attio.o > .libs/fort-control.o .libs/fort-dim.o .libs/fort-genatt.o > .libs/fort-geninq.o .libs/fort-genvar.o .libs/fort-lib.o > .libs/fort-misc.o .libs/fort-v2compat.o .libs/fort-vario.o > .libs/fort-var1io.o .libs/fort-varaio.o .libs/fort-varmio.o > .libs/fort-varsio.o -Wl,--whole-archive ../f90/.libs/libnetcdff90.a > -Wl,--no-whole-archive -Wl,-rpath > -Wl,/apps/netcdf/4.1.3-rc1/intel/lib > -L/apps/netcdf/4.1.3-rc1/intel/lib -lnetcdf -L/usr/kerberos/lib64 > -lcurl -lgssapi_krb5 -lkrb5 -lk5crypto -lcom_err -lidn -lssl -lcrypto > -lz -L/apps/intel/composerxe-2011.1.107/compiler/lib/intel64 > -L/apps/intel/composerxe-2011.1.107/ipp/../compiler/lib/intel64 > -L/apps/intel/composerxe-2011.1.107/ipp/lib/intel64 > -L/apps/intel/composerxe-2011.1.107/mkl/lib/intel64 > -L/apps/intel/composerxe-2011.1.107/tbb/lib/intel64//cc4.1.0_libc2.4_kernel2.6.16.21 > -L/usr/lib/gcc/x86_64-redhat-linux/4.1.2 > -L/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64 > -L/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../.. -L/lib64 -L/lib > -L/usr/lib64 -L/usr/lib -lifport -lifcore -limf -lsvml -lm -lipgo > -lintlc -lpthread -lgcc_s -lirc_s -ldl -lc -Wl,-soname > -Wl,libnetcdff.so.5 -o .libs/libnetcdff.so.5.1.0 > /data/gerry/apps/netcdf-4.1.3-rc1-snapshot2011051306/libtool: line > 8964: ifort: command not found > libtool: install: error: relink `libnetcdff.la' with the above command > before installing it > make[3]: *** [install-libLTLIBRARIES] Error 1 > make[3]: Leaving directory > /data/gerry/apps/netcdf-4.1.3-rc1-snapshot2011051306/fortran' > make[2]: *** [install-am] Error 2 > make[2]: Leaving directory > /data/gerry/apps/netcdf-4.1.3-rc1-snapshot2011051306/fortran' > make[1]: *** [install] Error 2 > make[1]: Leaving directory > /data/gerry/apps/netcdf-4.1.3-rc1-snapshot2011051306/fortran' > make: *** [install-recursive] Error 1 -- Ed Hartnett -- e...@unidata.ucar.edu _______________________________________________ https://lists.gnu.org/mailman/listinfo/libtool
