Luca, thanks for that very observational point. I actually do a basic check for a compositing window manage which will result in the problem you described. There is a command line switch to force it off in the program.
cpugraph -flat Unfortunately I didn't tie it to the opacity/visibility, which I will do in the next revision. The short of it is setting opacity with compositing off does not hide the window while setting visible to false does. I'll fix it by making the "-flat" switch assume the compositor is off.
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