I communicated this issue to the list a while ago.
In case anyone has the same problem, I have solved this the following way:

Go to system preferences
Cataloging
NoZebraIndexes

Change isbn to nb
save

Reindex using rebuild_nozebra.pl

Now ISBN searches work.

I still have the same problem with "Limit type to"
What is the type index called in NoZebraIndexes?

I will appreciate comments about this issue.
1) Why is this?
2) How does zebra = yes handle isbn searches?











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