I got my laptop and installed Ubuntu a month ago. This issue has been
active from the beginning.

I tried today mainline kernel v4.12-rc4 but it doesn't help.
Following lines appear to dmesg when connecting the dock into laptop with 
kernel v4.12-rc4 in use:
[ 2482.713699] hp_wmi: Unknown event_id - 131073 - 0x1
[ 2483.284641] ACPI Error: [SPRT] Namespace lookup failure, AE_ALREADY_EXISTS 
(20170303/dswload2-330)
[ 2483.284656] ACPI Exception: AE_ALREADY_EXISTS, During name lookup/catalog 
(20170303/psobject-241)
[ 2483.284664] ACPI Error: Method parse/execution failed [\_GPE._E4C] (Node 
ffff8b739d18d528), AE_ALREADY_EXISTS (20170303/psparse-543)
[ 2483.284676] ACPI Error: Method parse/execution failed [\_GPE._E4C] (Node 
ffff8b739d18d528), AE_ALREADY_EXISTS (20170303/psparse-543)
[ 2483.284690] ACPI Exception: AE_ALREADY_EXISTS, while evaluating GPE method 
[_E4C] (20170303/evgpe-646)
[ 2483.600163] pci 0000:04:00.0: [8086:1578] type 01 class 0x060400
[ 2483.600317] pci 0000:04:00.0: supports D1 D2
[ 2483.600319] pci 0000:04:00.0: PME# supported from D0 D1 D2 D3hot D3cold
[ 2483.600495] pci 0000:04:00.0: System wakeup disabled by ACPI
[ 2483.600696] pci 0000:05:00.0: [8086:1578] type 01 class 0x060400
[ 2483.600847] pci 0000:05:00.0: supports D1 D2
[ 2483.600848] pci 0000:05:00.0: PME# supported from D0 D1 D2 D3hot D3cold
[ 2483.600968] pci 0000:05:01.0: [8086:1578] type 01 class 0x060400
[ 2483.601117] pci 0000:05:01.0: supports D1 D2
[ 2483.601118] pci 0000:05:01.0: PME# supported from D0 D1 D2 D3hot D3cold
[ 2483.601230] pci 0000:05:02.0: [8086:1578] type 01 class 0x060400
[ 2483.601376] pci 0000:05:02.0: supports D1 D2
[ 2483.601378] pci 0000:05:02.0: PME# supported from D0 D1 D2 D3hot D3cold
[ 2483.601494] pci 0000:05:04.0: [8086:1578] type 01 class 0x060400
[ 2483.601642] pci 0000:05:04.0: supports D1 D2
[ 2483.601643] pci 0000:05:04.0: PME# supported from D0 D1 D2 D3hot D3cold
[ 2483.601784] pci 0000:04:00.0: PCI bridge to [bus 05-6e]
[ 2483.601796] pci 0000:04:00.0:   bridge window [mem 0xb4000000-0xe20fffff]
[ 2483.601803] pci 0000:04:00.0:   bridge window [mem 0x50000000-0x99ffffff 
64bit pref]
[ 2483.601894] pci 0000:06:00.0: [8086:1577] type 00 class 0x088000
[ 2483.601925] pci 0000:06:00.0: reg 0x10: [mem 0xe2000000-0xe203ffff]
[ 2483.601938] pci 0000:06:00.0: reg 0x14: [mem 0xe2040000-0xe2040fff]
[ 2483.602113] pci 0000:06:00.0: supports D1 D2
[ 2483.602115] pci 0000:06:00.0: PME# supported from D0 D1 D2 D3hot D3cold
[ 2483.602285] pci 0000:05:00.0: PCI bridge to [bus 06]
[ 2483.602296] pci 0000:05:00.0:   bridge window [mem 0xe2000000-0xe20fffff]
[ 2483.602372] pci 0000:05:01.0: PCI bridge to [bus 07-39]
[ 2483.602383] pci 0000:05:01.0:   bridge window [mem 0xb4000000-0xcbefffff]
[ 2483.602390] pci 0000:05:01.0:   bridge window [mem 0x50000000-0x6fffffff 
64bit pref]
[ 2483.602459] pci 0000:05:02.0: PCI bridge to [bus 3a]
[ 2483.602470] pci 0000:05:02.0:   bridge window [mem 0xcbf00000-0xcbffffff]
[ 2483.602543] pci 0000:05:04.0: PCI bridge to [bus 3b-6e]
[ 2483.602553] pci 0000:05:04.0:   bridge window [mem 0xcc000000-0xe1ffffff]
[ 2483.602560] pci 0000:05:04.0:   bridge window [mem 0x70000000-0x99ffffff 
64bit pref]
[ 2483.602596] pci_bus 0000:05: Allocating resources
[ 2483.602637] pci 0000:05:01.0: bridge window [io  0x1000-0x0fff] to [bus 
07-39] add_size 1000
[ 2483.602657] pci 0000:05:04.0: bridge window [io  0x1000-0x0fff] to [bus 
3b-6e] add_size 1000
[ 2483.602669] pci 0000:04:00.0: bridge window [io  0x1000-0x0fff] to [bus 
05-6e] add_size 2000
[ 2483.602673] pci 0000:04:00.0: BAR 13: no space for [io  size 0x2000]
[ 2483.602675] pci 0000:04:00.0: BAR 13: failed to assign [io  size 0x2000]
[ 2483.602678] pci 0000:04:00.0: BAR 13: no space for [io  size 0x2000]
[ 2483.602679] pci 0000:04:00.0: BAR 13: failed to assign [io  size 0x2000]
[ 2483.602683] pci 0000:05:01.0: BAR 13: no space for [io  size 0x1000]
[ 2483.602684] pci 0000:05:01.0: BAR 13: failed to assign [io  size 0x1000]
[ 2483.602687] pci 0000:05:04.0: BAR 13: no space for [io  size 0x1000]
[ 2483.602688] pci 0000:05:04.0: BAR 13: failed to assign [io  size 0x1000]
[ 2483.602691] pci 0000:05:04.0: BAR 13: no space for [io  size 0x1000]
[ 2483.602693] pci 0000:05:04.0: BAR 13: failed to assign [io  size 0x1000]
[ 2483.602695] pci 0000:05:01.0: BAR 13: no space for [io  size 0x1000]
[ 2483.602696] pci 0000:05:01.0: BAR 13: failed to assign [io  size 0x1000]
[ 2483.602699] pci 0000:05:00.0: PCI bridge to [bus 06]
[ 2483.602706] pci 0000:05:00.0:   bridge window [mem 0xe2000000-0xe20fffff]
[ 2483.602716] pci 0000:05:01.0: PCI bridge to [bus 07-39]
[ 2483.602722] pci 0000:05:01.0:   bridge window [mem 0xb4000000-0xcbefffff]
[ 2483.602727] pci 0000:05:01.0:   bridge window [mem 0x50000000-0x6fffffff 
64bit pref]
[ 2483.602735] pci 0000:05:02.0: PCI bridge to [bus 3a]
[ 2483.602741] pci 0000:05:02.0:   bridge window [mem 0xcbf00000-0xcbffffff]
[ 2483.602751] pci 0000:05:04.0: PCI bridge to [bus 3b-6e]
[ 2483.602757] pci 0000:05:04.0:   bridge window [mem 0xcc000000-0xe1ffffff]
[ 2483.602761] pci 0000:05:04.0:   bridge window [mem 0x70000000-0x99ffffff 
64bit pref]
[ 2483.602769] pci 0000:04:00.0: PCI bridge to [bus 05-6e]
[ 2483.602775] pci 0000:04:00.0:   bridge window [mem 0xb4000000-0xe20fffff]
[ 2483.602779] pci 0000:04:00.0:   bridge window [mem 0x50000000-0x99ffffff 
64bit pref]
[ 2483.893394] ACPI Warning: \_SB.PCI0.PEG0.PEGP._DSM: Argument #4 type 
mismatch - Found [Buffer], ACPI requires [Package] (20170303/nsarguments-95)

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https://bugs.launchpad.net/bugs/1696325

Title:
  USB, display and ethernet ports in HP Thunderbolt dock don't work

Status in linux package in Ubuntu:
  Confirmed

Bug description:
  I have laptop HP ZBook G3 Studio with Thunderbolt dock P5Q58AA.
  Installed OS is Ubuntu 16.04.2 LTS

  When I connect dock into laptop only power works and laptop can be
  shutdown by pressing power button in dock. USB ports, display ports,
  ethernet port and audio plug are not working.

  
  $ lsb_release -rd
  Description:  Ubuntu 16.04.2 LTS
  Release:      16.04

  $ apt-cache policy linux-image-generic-hwe-16.04
  linux-image-generic-hwe-16.04:
    Installed: 4.8.0.54.25
    Candidate: 4.8.0.54.25
    Version table:
   *** 4.8.0.54.25 500
          500 http://fi.archive.ubuntu.com/ubuntu xenial-updates/main amd64 
Packages
          500 http://security.ubuntu.com/ubuntu xenial-security/main amd64 
Packages
          100 /var/lib/dpkg/status
  --- 
  ApportVersion: 2.20.1-0ubuntu2.6
  Architecture: amd64
  AudioDevicesInUse:
   USER        PID ACCESS COMMAND
   /dev/snd/controlC1:  markus     3304 F.... pulseaudio
   /dev/snd/controlC0:  markus     3304 F.... pulseaudio
  CurrentDesktop: Unity
  DistroRelease: Ubuntu 16.04
  EcryptfsInUse: Yes
  InstallationDate: Installed on 2017-04-07 (61 days ago)
  InstallationMedia: Ubuntu 16.04.2 LTS "Xenial Xerus" - Release amd64 
(20170215.2)
  Lsusb:
   Bus 002 Device 001: ID 1d6b:0003 Linux Foundation 3.0 root hub
   Bus 001 Device 003: ID 045e:00cb Microsoft Corp. Basic Optical Mouse v2.0
   Bus 001 Device 002: ID 045e:07f8 Microsoft Corp. Wired Keyboard 600 (model 
1576)
   Bus 001 Device 004: ID 8087:0a2b Intel Corp. 
   Bus 001 Device 001: ID 1d6b:0002 Linux Foundation 2.0 root hub
  MachineType: HP HP ZBook Studio G3
  NonfreeKernelModules: nvidia_uvm nvidia_drm nvidia_modeset nvidia
  Package: linux (not installed)
  ProcFB: 0 EFI VGA
  ProcKernelCmdLine: BOOT_IMAGE=/boot/vmlinuz-4.8.0-54-generic.efi.signed 
root=UUID=2b78b572-05a1-4c01-b97d-9c1fea406faf ro quiet splash nomodeset 
pnpacpi=off vt.handoff=7
  ProcVersionSignature: Ubuntu 4.8.0-54.57~16.04.1-generic 4.8.17
  RelatedPackageVersions:
   linux-restricted-modules-4.8.0-54-generic N/A
   linux-backports-modules-4.8.0-54-generic  N/A
   linux-firmware                            1.157.10
  Tags:  xenial
  Uname: Linux 4.8.0-54-generic x86_64
  UpgradeStatus: No upgrade log present (probably fresh install)
  UserGroups: adm cdrom dip docker lpadmin plugdev sambashare sudo
  _MarkForUpload: True
  dmi.bios.date: 11/02/2016
  dmi.bios.vendor: HP
  dmi.bios.version: N82 Ver. 01.15
  dmi.board.name: 80D4
  dmi.board.vendor: HP
  dmi.board.version: KBC Version 11.67
  dmi.chassis.type: 10
  dmi.chassis.vendor: HP
  dmi.modalias: 
dmi:bvnHP:bvrN82Ver.01.15:bd11/02/2016:svnHP:pnHPZBookStudioG3:pvr:rvnHP:rn80D4:rvrKBCVersion11.67:cvnHP:ct10:cvr:
  dmi.product.name: HP ZBook Studio G3
  dmi.sys.vendor: HP

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