Regarding #3, it is a fresh installation of this Ubuntu version. 16.04
works correctly. I have seen similar behavior when I have upgraded 15.10
to newer kernel (for different kernels).

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https://bugs.launchpad.net/bugs/1663265

Title:
  hibernation does not work probably due to ata subsystem failure (16.10
  server)

Status in linux package in Ubuntu:
  Confirmed

Bug description:
  Details:
  * Ubuntu 16.10 Server
  * System right after installation
  * only serial console logging has been enabled
  * used pm-hibernate to initiate S4 transition from root account

  Logs according to https://wiki.ubuntu.com/DebuggingKernelHibernate has
  been collected and attached.

  The same configuration on 16.04 server works perfectly.

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