Uninstalling the nvidia binary driver (367.57) and moving back to
Nouveau "fixed" the problem for me. The reproducibility of this problem
seems to dependent on the nvidia video card model, as I have another
workstation with another nvidia card model and the other one had no
issue with the boot prompt on newer kernel.

The boot prompt UI definitely changed between -31 and -57 and the video
driver probably mess up. So I don't think it's the kernel itself but
plymouth (? or whatever prompts for the FDE password) upgrade that
happened around the same time.

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https://bugs.launchpad.net/bugs/1640297

Title:
  16.04.1 LTS hang during boot 4.4.0-45-generic with /etc/crypttab.
  Boots fine in 4.4.0-42-generic and older

Status in linux package in Ubuntu:
  In Progress

Bug description:
  System hangs during boot with 4.4.0-45-generic if /etc/crypptab
  contains a valid entry. Passphrase prompt never seen. Black screen
  with blinking underscore in upper left corner. Repeated attempts to
  type passphrase have no effect.

  There are two workarounds:
  1) Comment out line referring the encrypted partition in /etc/crypttab and 
/etc/fstab. Mount the partition manually after boot completes
  2) Boot in 4.4.0-42-generic which works as do earlier versions. i.e. the user 
provides passphrase at the prompt during boot and the system finishes booting

  robert@kalymnos:~$ cat /etc/crypttab
  spare2 UUID=498b08bb-5e6b-4ddf-8b37-e059665a34e6 none luks
  robert@kalymnos:~$ grep mapper /etc/fstab
  /dev/mapper/spare2                        /spare2     ext4 defaults 0 2
  --- 
  ApportVersion: 2.20.1-0ubuntu2.1
  Architecture: amd64
  AudioDevicesInUse:
   USER        PID ACCESS COMMAND
   /dev/snd/controlC1:  robert     2413 F.... pulseaudio
   /dev/snd/controlC0:  robert     2413 F.... pulseaudio
  CurrentDesktop: Unity
  DistroRelease: Ubuntu 16.04
  HibernationDevice: RESUME=UUID=291e75f9-3814-499b-bbb2-f385c164b942
  InstallationDate: Installed on 2016-08-18 (83 days ago)
  InstallationMedia: Ubuntu 16.04.1 LTS "Xenial Xerus" - Release amd64 
(20160719)
  IwConfig:
   lo        no wireless extensions.
   
   enp0s25   no wireless extensions.
  JournalErrors:
   Error: command ['journalctl', '-b', '--priority=warning', '--lines=1000'] 
failed with exit code 1: Hint: You are currently not seeing messages from other 
users and the system.
         Users in the 'systemd-journal' group can see all messages. Pass -q to
         turn off this notice.
   No journal files were opened due to insufficient permissions.
  NonfreeKernelModules: nvidia_uvm nvidia_drm nvidia_modeset nvidia
  Package: linux (not installed)
  ProcFB:
   
  ProcKernelCmdLine: BOOT_IMAGE=/vmlinuz-4.4.0-42-generic 
root=UUID=24166ab8-327a-4477-96d2-3f57b4a47657 ro quiet splash
  ProcVersionSignature: Ubuntu 4.4.0-42.62-generic 4.4.21
  RelatedPackageVersions:
   linux-restricted-modules-4.4.0-42-generic N/A
   linux-backports-modules-4.4.0-42-generic  N/A
   linux-firmware                            1.157.4
  RfKill:
   
  Tags:  xenial
  Uname: Linux 4.4.0-42-generic x86_64
  UpgradeStatus: No upgrade log present (probably fresh install)
  UserGroups:
   
  WifiSyslog:
   
  _MarkForUpload: True
  dmi.bios.date: 07/29/2013
  dmi.bios.vendor: Intel Corp.
  dmi.bios.version: SOX5810J.86A.5600.2013.0729.2250
  dmi.board.asset.tag: Base Board Asset Tag
  dmi.board.name: DX58SO
  dmi.board.vendor: Intel Corporation
  dmi.board.version: AAE29331-701
  dmi.chassis.type: 2
  dmi.modalias: 
dmi:bvnIntelCorp.:bvrSOX5810J.86A.5600.2013.0729.2250:bd07/29/2013:svn:pn:pvr:rvnIntelCorporation:rnDX58SO:rvrAAE29331-701:cvn:ct2:cvr:
  --- 
  ApportVersion: 2.20.1-0ubuntu2.1
  Architecture: amd64
  AudioDevicesInUse:
   USER        PID ACCESS COMMAND
   /dev/snd/controlC1:  robert     2413 F.... pulseaudio
   /dev/snd/controlC0:  robert     2413 F.... pulseaudio
  CurrentDesktop: Unity
  DistroRelease: Ubuntu 16.04
  HibernationDevice: RESUME=UUID=291e75f9-3814-499b-bbb2-f385c164b942
  InstallationDate: Installed on 2016-08-18 (83 days ago)
  InstallationMedia: Ubuntu 16.04.1 LTS "Xenial Xerus" - Release amd64 
(20160719)
  IwConfig:
   lo        no wireless extensions.
   
   enp0s25   no wireless extensions.
  JournalErrors:
   Error: command ['journalctl', '-b', '--priority=warning', '--lines=1000'] 
failed with exit code 1: Hint: You are currently not seeing messages from other 
users and the system.
         Users in the 'systemd-journal' group can see all messages. Pass -q to
         turn off this notice.
   No journal files were opened due to insufficient permissions.
  NonfreeKernelModules: nvidia_uvm nvidia_drm nvidia_modeset nvidia
  Package: linux (not installed)
  ProcFB:
   
  ProcKernelCmdLine: BOOT_IMAGE=/vmlinuz-4.4.0-42-generic 
root=UUID=24166ab8-327a-4477-96d2-3f57b4a47657 ro quiet splash
  ProcVersionSignature: Ubuntu 4.4.0-42.62-generic 4.4.21
  RelatedPackageVersions:
   linux-restricted-modules-4.4.0-42-generic N/A
   linux-backports-modules-4.4.0-42-generic  N/A
   linux-firmware                            1.157.4
  RfKill:
   
  Tags:  xenial
  Uname: Linux 4.4.0-42-generic x86_64
  UpgradeStatus: No upgrade log present (probably fresh install)
  UserGroups:
   
  WifiSyslog:
   
  _MarkForUpload: True
  dmi.bios.date: 07/29/2013
  dmi.bios.vendor: Intel Corp.
  dmi.bios.version: SOX5810J.86A.5600.2013.0729.2250
  dmi.board.asset.tag: Base Board Asset Tag
  dmi.board.name: DX58SO
  dmi.board.vendor: Intel Corporation
  dmi.board.version: AAE29331-701
  dmi.chassis.type: 2
  dmi.modalias: 
dmi:bvnIntelCorp.:bvrSOX5810J.86A.5600.2013.0729.2250:bd07/29/2013:svn:pn:pvr:rvnIntelCorporation:rnDX58SO:rvrAAE29331-701:cvn:ct2:cvr:

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