Thanks for that. Also I had a file with spaces in it like sample_image_name more name.jpg and it didn't work...either way, but taking out the spaces did.
On Thursday, 4 February 2016 06:01:32 UTC+10:30, Matthias Geier wrote: > > On Wed, Feb 3, 2016 at 8:17 PM, Carlos Guzman wrote: > > Sorry for the simple questions. But I can run nbconvert --to latex, but > how > > do I run latex manually? > > You can simply run > > pdflatex myfile.tex > > But sometimes (e.g. if you have references) you have to run this several > times. > > I highly recommend "latexmk", which will run pdflatex the right number > of times and also other commands if necessary and it can also display > the result, even continuously. > > See this page for more details: http://mg.readthedocs.org/latexmk.html > > cheers, > Matthias > > > > > On Wednesday, February 3, 2016 at 10:40:05 AM UTC-6, takowl wrote: > >> > >> On 3 February 2016 at 16:22, Carlos Guzman <[email protected]> > wrote: > >>> > >>> While this kept my images in my ipython notebook file, when I tried > >>> converting to pdf I got an error: > >>>> > >>>> > >>>> LaTeX Warning: File `heatmap_BOTH_intragenic_allhistone.png' not > found > >>>> on input > >>>> line 350. > >>> > >>> > >>> Any idea what might be causing this? > >> > >> > >> Oh, I remember now. We run latex in a temporary directory because of > the > >> mess it makes in the directory where it's run. But that breaks any > >> references to external files it needs to pull in: > >> https://github.com/jupyter/nbconvert/issues/223 > >> > >> You can work around this by running nbconvert --to latex, and then > running > >> latex manually to generate the PDF. > > > > -- > > You received this message because you are subscribed to the Google > Groups > > "Project Jupyter" group. > > To unsubscribe from this group and stop receiving emails from it, send > an > > email to [email protected] <javascript:>. > > To post to this group, send email to [email protected] > <javascript:>. > > To view this discussion on the web visit > > > https://groups.google.com/d/msgid/jupyter/c0238550-174b-4a37-b248-3585ef82b89c%40googlegroups.com. > > > > > > For more options, visit https://groups.google.com/d/optout. > -- You received this message because you are subscribed to the Google Groups "Project Jupyter" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. To view this discussion on the web visit https://groups.google.com/d/msgid/jupyter/fe451283-ad91-491e-8ca5-949de278672d%40googlegroups.com. For more options, visit https://groups.google.com/d/optout.
