Thanks for the clarification Stefan. It seems you are always several
steps ahead of me. :]

SS

On 8/13/07, Stefan Steiniger <[EMAIL PROTECTED]> wrote:
> no.. it was a fix sended
>
> Sunburned Surveyor schrieb:
> > Stefan,
> >
> > I am sorry it is taking me so long to respond to this e-mail. Is this
> > something that we need a patch for?
> >
> > If so I can make the needed changes in the SVN.
> >
> > Let me know.
> >
> > The Sunburned Surveyor
> >
> > On 7/24/07, Stefan Steiniger <[EMAIL PROTECTED]> wrote:
> >> forwad for Malte as I accidently delted his message from the pending
> >> request list
> >>
> >> Dear OpenJump Enthusiast,
> >>
> >> I've tried to make a copy of a FeatureCollection containing Features
> >> with null values.
> >> I used the cloneFeatureCollection-Method of the FeatureCollectionTools
> >> Class from the Pirol Project (now implemented in the OJ beta, too) and
> >> got a NPE.
> >>
> >> I think a Feature should have Attributes containing null values, so I
> >> fixed this.
> >> The fixed class is attached.
> >>
> >> Greetings from cloudy Hanover,
> >> Malte
> >>
> >>
> >>
> >>
> >>
> >> /*
> >>  * Created on 12.01.2005
> >>  *
> >>  * SVN header information:
> >>  *  $Author: mentaer $
> >>  *  $Rev: 2509 $
> >>  *  $Date: 2007/02/03 14:19:04 $
> >>  *  $Id: FeatureCollectionTools.java,v 1.2 2007/02/03 14:19:04 mentaer Exp 
> >> $s
> >>  */
> >> package de.fho.jump.pirol.utilities.apiTools;
> >>
> >> import java.util.ArrayList;
> >> import java.util.Date;
> >> import java.util.HashMap;
> >> import java.util.HashSet;
> >> import java.util.List;
> >> import java.util.Map;
> >> import java.util.Set;
> >>
> >> import com.vividsolutions.jts.geom.Coordinate;
> >> import com.vividsolutions.jts.geom.Envelope;
> >> import com.vividsolutions.jts.geom.Geometry;
> >> import com.vividsolutions.jts.geom.GeometryFactory;
> >> import com.vividsolutions.jump.feature.AttributeType;
> >> import com.vividsolutions.jump.feature.BasicFeature;
> >> import com.vividsolutions.jump.feature.Feature;
> >> import com.vividsolutions.jump.feature.FeatureCollection;
> >> import com.vividsolutions.jump.feature.FeatureDataset;
> >> import com.vividsolutions.jump.feature.FeatureSchema;
> >> import com.vividsolutions.jump.workbench.model.Layer;
> >> import com.vividsolutions.jump.workbench.plugin.PlugInContext;
> >> import com.vividsolutions.jump.workbench.ui.EditTransaction;
> >>
> >> import 
> >> de.fho.jump.pirol.utilities.FeatureCollection.PirolFeatureCollection;
> >> import de.fho.jump.pirol.utilities.FormulaParsing.FormulaValue;
> >> import de.fho.jump.pirol.utilities.attributes.AttributeInfo;
> >> import de.fho.jump.pirol.utilities.comparisonAndSorting.ObjectComparator;
> >> import de.fho.jump.pirol.utilities.debugOutput.DebugUserIds;
> >> import de.fho.jump.pirol.utilities.debugOutput.PersonalLogger;
> >> import de.fho.jump.pirol.utilities.metaData.MetaInformationHandler;
> >>
> >> /**
> >>  * Class to speed up handling of FeatureCollections (or lists of features) 
> >> during progamming by implementing
> >>  * a set of common tasks.
> >>  * Most functions can be used in a static way, but on the other hand for 
> >> each FeatureCollection a instance of this class can be invoked.
> >>  * This might be more convenient, if there is more than one thing to do 
> >> with the same feature collection.
> >>  *
> >>  * @author Ole Rahn
> >>  * <br>
> >>  * <br>FH Osnabr&uuml;ck - University of Applied Sciences Osnabr&uuml;ck,
> >>  * <br>Project: PIROL (2005),
> >>  * <br>Subproject: Daten- und Wissensmanagement
> >>  *
> >>  * @version $Rev: 2509 $
> >>  */
> >>
> >> public class FeatureCollectionTools extends ToolToMakeYourLifeEasier {
> >>
> >>    protected FeatureCollection fc = null;
> >>    protected List<Feature> featureList;
> >>    private HashMap<Integer, Feature> fid2Object = new HashMap<Integer, 
> >> Feature>();
> >>
> >>    protected static PersonalLogger logger = new 
> >> PersonalLogger(DebugUserIds.ALL);
> >>
> >>    public FeatureCollectionTools( FeatureCollection fc ){
> >>        super();
> >>        this.fc = fc;
> >>        this.featureList = this.fc.getFeatures();
> >>    }
> >>
> >>    public FeatureCollectionTools( List<Feature> fcl ){
> >>        super();
> >>        this.featureList = fcl;
> >>    }
> >>
> >>    /**
> >>     * gets the Feature with the given FID.
> >>     [EMAIL PROTECTED] fid FID to look for
> >>     [EMAIL PROTECTED] the feature
> >>     */
> >>    public Feature getFeature( int fid ){
> >>        Integer FID = new Integer(fid);
> >>                if (!this.fid2Object.containsKey(FID)){
> >>                    
> >> this.fid2Object.put(FID,FeatureCollectionTools.getFeatureFromCollection(this.featureList,
> >>  fid));
> >>                }
> >>
> >>                return (Feature)this.fid2Object.get(FID);
> >>        }
> >>
> >>
> >>    /**
> >>     * Get the feature with the specified ID from the List
> >>     [EMAIL PROTECTED] features array with Feature objects
> >>     [EMAIL PROTECTED] fid the feature ID we are looking for
> >>     [EMAIL PROTECTED] feature with specified FID if exists, else null
> >>     */
> >>    public static Feature getFeatureFromCollection( List<Feature> features, 
> >> int fid ){
> >>                return 
> >> FeatureCollectionTools.getFeatureFromCollection((Feature[])features.toArray(new
> >>  Feature[0]), fid);
> >>        }
> >>
> >>    /**
> >>     * Get the feature with the specified ID from the array
> >>     [EMAIL PROTECTED] features array with Feature objects
> >>     [EMAIL PROTECTED] fid the feature ID we are looking for
> >>     [EMAIL PROTECTED] feature with specified FID if exists, else null
> >>     */
> >>    public static Feature getFeatureFromCollection( Feature[] features, int 
> >> fid ){
> >>                Feature feat;
> >>
> >>                for ( int i=0; i < features.length; i++ ){
> >>                        feat = features[i];
> >>
> >>                        if (feat.getID() == fid){
> >>                                return feat;
> >>                        }
> >>                }
> >>                return null;
> >>        }
> >>
> >>    /**
> >>     * deep copies a the FeatureSchema, the Features and their Geometries
> >>     * @param fc the FeatureCollection to copy
> >>     * @return the new copied FeatureCollection
> >>     */
> >>    public final static PirolFeatureCollection 
> >> cloneFeatureCollection(FeatureCollection fc){
> >>        FeatureSchema clonedSchema = 
> >> (FeatureSchema)fc.getFeatureSchema().clone();
> >>        FeatureDataset newFc = new FeatureDataset(clonedSchema);
> >>
> >>        Feature[] featuresToCopy = FeatureCollection2FeatureArray(fc);
> >>        Feature newFeat = null;
> >>        AttributeType attrType = null;
> >>
> >>        for (int i=0; i<featuresToCopy.length; i++){
> >>                newFeat = new BasicFeature(clonedSchema);
> >>
> >>                for (int attr=0; attr<clonedSchema.getAttributeCount(); 
> >> attr++){
> >>                        attrType = clonedSchema.getAttributeType(attr);
> >>                        /**
> >>                             * FIX for Null Values.
> >>                             * Added by mweller 24.07.2007
> >>                             */
> >>                      if(featuresToCopy[i].getAttribute(attr) != null){
> >>                        if (attrType.equals(AttributeType.DOUBLE)){
> >>                                newFeat.setAttribute(attr, new 
> >> Double(((Double)featuresToCopy[i].getAttribute(attr)).doubleValue()) );
> >>                        } else if (attrType.equals(AttributeType.INTEGER)){
> >>                                newFeat.setAttribute(attr, new 
> >> Integer(((Integer)featuresToCopy[i].getAttribute(attr)).intValue()) );
> >>                        } else if (attrType.equals(AttributeType.STRING)){
> >>                                newFeat.setAttribute(attr, 
> >> ((String)featuresToCopy[i].getAttribute(attr)).trim() );
> >>                        } else if (attrType.equals(AttributeType.GEOMETRY)){
> >>                                newFeat.setAttribute(attr, 
> >> ((Geometry)featuresToCopy[i].getAttribute(attr)).clone() );
> >>                        } else if (attrType.equals(AttributeType.DATE)){
> >>                                newFeat.setAttribute(attr, 
> >> ((Date)featuresToCopy[i].getAttribute(attr)).clone() );
> >>                        } else if (attrType.equals(AttributeType.OBJECT)){
> >>                                logger.printError("not implemented!");
> >>                                newFeat.setAttribute(attr, 
> >> (featuresToCopy[i].getAttribute(attr)) );
> >>                        }
> >>                }
> >>                else{
> >>                  newFeat.setAttribute(attr, null );
> >>          }
> >>                }
> >>
> >>                newFc.add(newFeat);
> >>        }
> >>        return MetaInformationHandler.createPirolFeatureCollection(newFc);
> >>    }
> >>
> >>    /**
> >>     * Get the feature with the specified ID from the FeatureCollection
> >>     [EMAIL PROTECTED] features array with Feature objects
> >>     [EMAIL PROTECTED] fid the feature ID we are looking for
> >>     [EMAIL PROTECTED] feature with specified FID if exists, else null
> >>     */
> >>    public static Feature getFeatureFromCollection( FeatureCollection 
> >> features, int fid ){
> >>        return 
> >> FeatureCollectionTools.getFeatureFromCollection(features.getFeatures(), 
> >> fid);
> >>        }
> >>
> >>    /**
> >>     [EMAIL PROTECTED] features list of features to calculate the mean for
> >>     [EMAIL PROTECTED] attr name of attribute to calculate the mean for
> >>     [EMAIL PROTECTED] the mean (double because a mean of integers will 
> >> very likely be a double)
> >>     */
> >>    public static double getAritmeticMiddleForAttribute( Feature[] 
> >> features, String attr ){
> >>
> >>        if (features == null || features.length==0) return Double.NaN;
> >>
> >>        Feature f = features[0];
> >>        FeatureSchema fs = f.getSchema();
> >>        int attrInd = fs.getAttributeIndex(attr);
> >>        return FeatureCollectionTools.getAritmeticMiddleForAttribute( 
> >> features, attrInd );
> >>    }
> >>
> >>    /**
> >>     * Method to calculate means (or modes) for the attributes given. If 
> >> means or modes
> >>     * are calulated depends on the attribute type of each given given 
> >> attribute.
> >>     * This method is hopefully faster, than calculation each mean (mode) 
> >> in an extra loop,
> >>     * if there are more means (modes) to calculate than one...
> >>     [EMAIL PROTECTED] features list of features to calculate mean/modes for
> >>     [EMAIL PROTECTED] attrs array of attribute names to calculate 
> >> mean/modes for
> >>     [EMAIL PROTECTED] array of objects, representing means (or modes) --> 
> >> e.g. Double, Integer or String objects.
> >>     */
> >>    public static Object[] getMeanOrModeForAttributes( Feature[] features, 
> >> String[] attrs ){
> >>        if (features==null || features.length==0) return null;
> >>
> >>        int numVals = features.length;
> >>        int numAttrs = attrs.length;
> >>
> >>        FeatureSchema fs = features[0].getSchema();
> >>        Object[] meansOrModes = new Object[numAttrs];
> >>        AttributeType[] ats = new AttributeType[numAttrs];
> >>
> >>        Object[] sumsOrMaps = new Object[numAttrs];
> >>        boolean[] atIsNumeric = new boolean[numAttrs];
> >>
> >>        for (int i=0; i<numAttrs; i++){
> >>            ats[i] = fs.getAttributeType(attrs[i]);
> >>            atIsNumeric[i] = 
> >> FeatureCollectionTools.isAttributeTypeNumeric(ats[i]);
> >>            if (atIsNumeric[i]){
> >>                sumsOrMaps[i] = new Double(0);
> >>            } else {
> >>                // Map; no. of max. occurances; modus value
> >>                sumsOrMaps[i] = new Object[]{ new HashMap(), new 
> >> Integer(0), null };
> >>            }
> >>        }
> >>
> >>        Feature currFeat;
> >>        Double sum;
> >>        Object value, modus;
> >>        Map<Object,Object> map;
> >>
> >>        Feature[] featArray = features;
> >>
> >>        Integer maxOcc;
> >>        int occ = 0;
> >>
> >>        for (int i=0; i<featArray.length; i++){
> >>            currFeat = featArray[i];
> >>            for (int j=0; j<numAttrs; j++){
> >>                if (atIsNumeric[j]){
> >>                    sum = ((Double)sumsOrMaps[j]);
> >>                    if (currFeat.getAttribute(attrs[j]) != null){
> >>                        sumsOrMaps[j] = new Double(sum.doubleValue() + 
> >> ObjectComparator.getDoubleValue(currFeat.getAttribute(attrs[j])));
> >>                    } else {
> >>                        // value is skipped
> >>                        
> >> FeatureCollectionTools.logger.printMinorError("skipped a value (NULL), 
> >> when calculating mean for " + attrs[j]);
> >>                    }
> >>                } else {
> >>                    value = currFeat.getAttribute(attrs[j]);
> >>
> >>                    if (value.getClass().equals(String.class)){
> >>                        ((String)value).trim();
> >>                    }
> >>
> >>                    map = (Map)((Object[])sumsOrMaps[j])[0];
> >>                    maxOcc = (Integer)((Object[])sumsOrMaps[j])[1];
> >>                    modus = ((Object[])sumsOrMaps[j])[2];
> >>
> >>                    if ( map.containsKey(value) ){
> >>                        occ = ((Integer)map.get(value)).intValue();
> >>                        occ += 1;
> >>                        map.remove(value);
> >>                    } else {
> >>                        occ = 1;
> >>                    }
> >>                    map.put(value,new Integer(occ));
> >>
> >>                    if (occ > maxOcc.intValue()){
> >>                        maxOcc = new Integer(occ);
> >>                        modus = value;
> >>                    }
> >>
> >>                    sumsOrMaps[j] = new Object[]{map,maxOcc,modus};
> >>
> >>                }
> >>            }
> >>        }
> >>
> >>        for ( int i=0; i<meansOrModes.length; i++ ){
> >>            if (atIsNumeric[i]){
> >>                meansOrModes[i] = new Double( 
> >> ((Double)sumsOrMaps[i]).doubleValue()/((double)numVals) );
> >>            } else {
> >>                meansOrModes[i] = ((Object[])sumsOrMaps[i])[2];
> >>            }
> >>        }
> >>
> >>        return meansOrModes;
> >>    }
> >>
> >>    /**
> >>     * Creates an envelope object for the features in the given array. This 
> >> is an easy way
> >>     * to get an envelope for a subset of a layer's features.
> >>     [EMAIL PROTECTED] features array of Feature object to create an 
> >> envelope for
> >>     [EMAIL PROTECTED] the envelope containing the given features
> >>     */
> >>    public static Envelope getEnvelopeForFeatures(Feature[] features){
> >>        Envelope env = null;
> >>        Feature feat;
> >>
> >>        for (int i=0; i<features.length; i++){
> >>            feat = features[i];
> >>            if (env==null){
> >>                env = new Envelope(feat.getGeometry().getCoordinate());
> >>            } else {
> >>                env.expandToInclude(feat.getGeometry().getCoordinate());
> >>            }
> >>        }
> >>
> >>        return env;
> >>    }
> >>
> >>    /**
> >>     [EMAIL PROTECTED] features list of features to calculate the mean for
> >>     [EMAIL PROTECTED] attr index of attribute to calculate the mean for
> >>     [EMAIL PROTECTED] the mean (double because a mean of integers will 
> >> very likely be a double)
> >>     */
> >>    public static double getAritmeticMiddleForAttribute( List<Feature> 
> >> features, int attr ){
> >>        return 
> >> FeatureCollectionTools.getAritmeticMiddleForAttribute((Feature[])features.toArray(new
> >>  Feature[0]), attr);
> >>    }
> >>
> >>    /**
> >>     [EMAIL PROTECTED] featArray array of features to calculate the mean for
> >>     [EMAIL PROTECTED] attr index of attribute to calculate the mean for
> >>     [EMAIL PROTECTED] the mean (double because a mean of integers will 
> >> very likely be a double)
> >>     */
> >>    public static double getAritmeticMiddleForAttribute( Feature[] 
> >> featArray, int attr ){
> >>        double sumVals = 0;
> >>        int numVals = 0;
> >>
> >>        if (featArray.length==0) {
> >>            logger.printWarning("no features in list - return value will be 
> >> NAN!");
> >>            return Double.NaN;
> >>        }
> >>
> >>        Feature f = featArray[0];
> >>        FeatureSchema fs = f.getSchema();
> >>
> >>        if ( 
> >> FeatureCollectionTools.isAttributeTypeNumeric(fs.getAttributeType(attr)) ){
> >>
> >>            //Iterator iter = features.iterator();
> >>            Feature feat;
> >>            double value;
> >>
> >>            for (int i=0; i<featArray.length; i++){
> >>                feat = featArray[i];
> >>                value = 
> >> ObjectComparator.getDoubleValue(feat.getAttribute(attr));
> >>
> >>                sumVals += value;
> >>                numVals ++;
> >>            }
> >>        }
> >>
> >>        return (sumVals/(double)numVals);
> >>    }
> >>
> >>    /**
> >>     * Calculates the center of mass for the gives features' geometries.
> >>     * It's like getCentroid(), but puts out one center of mass for N 
> >> features instead of N centers for N features.
> >>     [EMAIL PROTECTED] features the features
> >>     [EMAIL PROTECTED] the point, representing the center of mass
> >>     */
> >>    public static Geometry getCenterOfMass( Feature[] features ){
> >>        double sumX = 0, sumY = 0;
> >>        GeometryFactory gf = new GeometryFactory();
> >>
> >>        if (features==null || features.length==0) return null;
> >>
> >>        Feature feat;
> >>
> >>        for (int i=0; i<features.length; i++){
> >>            feat = features[i];
> >>            sumX += feat.getGeometry().getCoordinate().x;
> >>            sumY += feat.getGeometry().getCoordinate().y;
> >>        }
> >>
> >>        double newX = sumX / (double)features.length;
> >>        double newY = sumY / (double)features.length;
> >>
> >>        return gf.createPoint(new Coordinate(newX, newY));
> >>    }
> >>
> >>    /**
> >>     [EMAIL PROTECTED] features list of features
> >>     [EMAIL PROTECTED] attr name of attribute
> >>     [EMAIL PROTECTED] number of differnt values in the given features 
> >> attributes or -1 if an error occurs
> >>     */
> >>    public static Set getSetOfDifferentAttributeValues( Feature[] features, 
> >> String attr ){
> >>        Feature f = features[0];
> >>        FeatureSchema fs = f.getSchema();
> >>        int attrInd = fs.getAttributeIndex(attr);
> >>        return FeatureCollectionTools.getSetOfDifferentAttributeValues( 
> >> features, attrInd );
> >>    }
> >>
> >>    /**
> >>     [EMAIL PROTECTED] features list of features
> >>     [EMAIL PROTECTED] attr index of attribute
> >>     [EMAIL PROTECTED] number of differnt values in the given features 
> >> attributes or -1 if an error occurs
> >>     */
> >>    public static Set<Object> getSetOfDifferentAttributeValues( Feature[] 
> >> features, int attr ){
> >>        Feature[] featArray = features;
> >>        int numFeats = featArray.length;
> >>
> >>        HashSet<Object> differentValues = new HashSet<Object>();
> >>        Object val;
> >>
> >>        for (int i=numFeats-1; i>=0; i--){
> >>
> >>            val = featArray[i].getAttribute(attr);
> >>            //if (!differentValues.contains(val))
> >>                differentValues.add(val);
> >>        }
> >>
> >>        return differentValues;
> >>    }
> >>
> >>    /**
> >>     [EMAIL PROTECTED] features list of features
> >>     [EMAIL PROTECTED] attr name of attribute
> >>     [EMAIL PROTECTED] number of differnt values in the given features 
> >> attributes or -1 if an error occurs
> >>     */
> >>    public static int getNumOfDifferentAttributeValues( Feature[] features, 
> >> String attr ){
> >>        Feature f = features[0];
> >>        FeatureSchema fs = f.getSchema();
> >>        int attrInd = fs.getAttributeIndex(attr);
> >>        return FeatureCollectionTools.getNumOfDifferentAttributeValues( 
> >> features, attrInd );
> >>    }
> >>
> >>    /**
> >>     [EMAIL PROTECTED] features list of features
> >>     [EMAIL PROTECTED] attr index of attribute
> >>     [EMAIL PROTECTED] number of differnt values in the given features 
> >> attributes or -1 if an error occurs
> >>     */
> >>    public static int getNumOfDifferentAttributeValues( Feature[] features, 
> >> int attr ){
> >>        return 
> >> FeatureCollectionTools.getSetOfDifferentAttributeValues(features,attr).size();
> >>    }
> >>
> >>    /**
> >>     [EMAIL PROTECTED] features list of features to calculate the mode for
> >>     [EMAIL PROTECTED] attr name of attribute to calculate the mode for
> >>     [EMAIL PROTECTED] the mode
> >>     */
> >>    public static Object getModusForAttribute( Feature[] features, String 
> >> attr ){
> >>        Feature f = features[0];
> >>        FeatureSchema fs = f.getSchema();
> >>        int attrInd = fs.getAttributeIndex(attr);
> >>        return FeatureCollectionTools.getModusForAttribute( features, 
> >> attrInd );
> >>    }
> >>
> >>
> >>    /**
> >>     * Counts the number of appearances of each value of the given 
> >> attributes within the given features.
> >>     * (Somewhat like a histogram for each given attribute, but each 
> >> histogram class is just a single value.)
> >>     * @param features array of Features to count value appearances for
> >>     * @param attrs array of attribute indices of attributes to count value 
> >> appearances for
> >>     * @return Array of mappings of values to number of appearances
> >>     */
> >>    public final static HashMap<Object,Integer>[] getValueAppearancesCount( 
> >> Feature[] features, int[] attrs ){
> >>        HashMap<Object,Integer>[] value2NumAppearanceMaps = new 
> >> HashMap[attrs.length];
> >>
> >>        for (int i=0; i<attrs.length; i++){
> >>                value2NumAppearanceMaps[i] = new HashMap<Object,Integer>();
> >>        }
> >>
> >>        Feature feat;
> >>        Object value;
> >>
> >>        for (int i=0; i<features.length; i++){
> >>            feat = features[i];
> >>
> >>            for (int attInd=0; attInd<attrs.length; attInd++){
> >>                value = feat.getAttribute(attrs[attInd]);
> >>
> >>                if (!value2NumAppearanceMaps[attInd].containsKey(value)){
> >>                        value2NumAppearanceMaps[attInd].put(value, 1);
> >>                } else {
> >>                        value2NumAppearanceMaps[attInd].put(value, 
> >> value2NumAppearanceMaps[attInd].get(value).intValue()+1);
> >>                }
> >>
> >>            }
> >>
> >>        }
> >>
> >>        return value2NumAppearanceMaps;
> >>    }
> >>
> >>    /**
> >>     [EMAIL PROTECTED] features list of features to calculate the mode for
> >>     [EMAIL PROTECTED] attr index of attribute to calculate the mode for
> >>     [EMAIL PROTECTED] the mode
> >>     */
> >>    public static Object getModusForAttribute( Feature[] features, int attr 
> >> ){
> >>        HashMap<Object,Integer> map = new HashMap<Object,Integer>();
> >>        Object modus = null;
> >>        int maxNr = 0;
> >>
> >>        if (features==null || features.length==0) return null;
> >>
> >>        Feature[] featArray = features;
> >>        Feature feat;
> >>        Object value;
> >>        int occ, numFeats = featArray.length;
> >>
> >>        for (int i=0; i<numFeats; i++){
> >>            feat = featArray[i];
> >>
> >>            value = feat.getAttribute(attr);
> >>
> >>            if (value.getClass().getName().equals(String.class.getName())){
> >>                ((String)value).trim();
> >>            }
> >>
> >>            if ( map.containsKey(value) ){
> >>                occ = ((Integer)map.get(value)).intValue();
> >>                occ += 1;
> >>                map.remove(value);
> >>            } else {
> >>                occ = 1;
> >>            }
> >>            map.put(value,new Integer(occ));
> >>
> >>            if (occ > maxNr){
> >>                maxNr = occ;
> >>                modus = value;
> >>            }
> >>        }
> >>
> >>        return modus;
> >>    }
> >>
> >>    /**
> >>     * deletes the given features from the map. It thereby creates an 
> >> EditTransaction that
> >>     * enables the user to undo the deletion.
> >>     [EMAIL PROTECTED] features features to be deleted
> >>     [EMAIL PROTECTED] context curr. PlugIn context
> >>     */
> >>    public static void deleteFeatures( List<Feature> features, 
> >> PlugInContext context ){
> >>        Map layer2FeatList = LayerTools.getLayer2FeatureMap(features, 
> >> context);
> >>
> >>        Layer[] layersWithFeatures = 
> >> (Layer[])layer2FeatList.keySet().toArray(new Layer[0]);
> >>        Feature[] selFeatsOfLayer;
> >>
> >>        for ( int i=0; i<layersWithFeatures.length; i++ ){
> >>            EditTransaction edtr = new EditTransaction(new ArrayList(), 
> >> "delete features", layersWithFeatures[i], true, true, 
> >> context.getLayerViewPanel());
> >>
> >>            selFeatsOfLayer = 
> >> (Feature[])((List)layer2FeatList.get(layersWithFeatures[i])).toArray(new 
> >> Feature[0]);
> >>
> >>            for (int j=0; j<selFeatsOfLayer.length; j++){
> >>                edtr.deleteFeature(selFeatsOfLayer[j]);
> >>            }
> >>
> >>            edtr.commit();
> >>            edtr.clearEnvelopeCaches();
> >>        }
> >>    }
> >>
> >>    /**
> >>     * "deep copys" the given Feature
> >>     [EMAIL PROTECTED] feat the feature to be copied
> >>     [EMAIL PROTECTED] copy of the feature
> >>     */
> >>    public static Feature copyFeature( Feature feat ){
> >>        Feature newFeat = new BasicFeature(feat.getSchema());
> >>
> >>        int numAttr = feat.getSchema().getAttributeCount();
> >>
> >>        for ( int i=0; i<numAttr; i++ ){
> >>            newFeat.setAttribute( feat.getSchema().getAttributeName(i), 
> >> feat.getAttribute(i) );
> >>        }
> >>
> >>        newFeat.setGeometry((Geometry)feat.getGeometry());
> >>
> >>        return newFeat;
> >>    }
> >>
> >>    /**
> >>     * "deep copys" the given Feature and thereby sets the given feature 
> >> schema
> >>     [EMAIL PROTECTED] feat the feature to be copied
> >>     [EMAIL PROTECTED] newFs the new feature schema
> >>     [EMAIL PROTECTED] copy of the feature
> >>     */
> >>    public static Feature copyFeatureAndSetFeatureSchema( Feature feat, 
> >> FeatureSchema newFs ){
> >>        feat = feat.clone(true);
> >>        FeatureSchema fs = feat.getSchema();
> >>
> >>        Feature newFeat = new BasicFeature(newFs);
> >>        int numAttr = feat.getSchema().getAttributeCount();
> >>
> >>        for ( int i=0; i<numAttr; i++ ){
> >>            newFeat.setAttribute( fs.getAttributeName(i), 
> >> feat.getAttribute(fs.getAttributeName(i)) );
> >>        }
> >>
> >>        newFeat.setGeometry((Geometry)feat.getGeometry());
> >>
> >>        return newFeat;
> >>    }
> >>
> >>    public String getUniqueAttributeName(String attr){
> >>        return FeatureCollectionTools.getUniqueAttributeName( this.fc, attr 
> >> );
> >>    }
> >>
> >>    public static String getUniqueAttributeName(FeatureCollection fc, 
> >> String attr){
> >>        FeatureSchema fs = fc.getFeatureSchema();
> >>        String newName = new String(attr);
> >>        String suffix = "";
> >>
> >>        for ( int i=2; FeatureCollectionTools.attributeExistsInSchema(fs, 
> >> newName+suffix); i++ ){
> >>            suffix = " ("+i+")";
> >>        }
> >>
> >>        return newName+suffix;
> >>    }
> >>
> >>    protected static boolean attributeExistsInSchema(FeatureSchema fs, 
> >> String attr){
> >>        try {
> >>            int index = fs.getAttributeIndex(attr);
> >>            return (index>=0);
> >>        } catch (RuntimeException e) {
> >>            return false;
> >>        }
> >>    }
> >>
> >>    public PirolFeatureCollection addAttributeToFeatureCollection( String 
> >> attr, AttributeType at, Object defaultVal ){
> >>        if (this.fc != null)
> >>            return FeatureCollectionTools.addAttributeToFeatureCollection( 
> >> this.fc, attr, at, defaultVal, true );
> >>        return null;
> >>    }
> >>
> >>    public static boolean isAttributeTypeNumeric( AttributeType at ){
> >>        return ( at.equals(AttributeType.DOUBLE) || 
> >> at.equals(AttributeType.INTEGER) );
> >>    }
> >>
> >>    /**
> >>     * Method to apply a given formula to the given, new attribute of the 
> >> given featureCollection
> >>     [EMAIL PROTECTED] oldFc old FeatureCollection that will be replaced by 
> >> the new one
> >>     [EMAIL PROTECTED] attrInfo information for the new attribute
> >>     [EMAIL PROTECTED] formula the parsed formula
> >>     [EMAIL PROTECTED] FeatureCollection containing the new attribute
> >>     */
> >>    public static PirolFeatureCollection applyFormulaToFeatureCollection( 
> >> FeatureCollection oldFc, AttributeInfo attrInfo, FormulaValue formula, 
> >> boolean clearOldFeatureCollection ){
> >>
> >>        PirolFeatureCollection newFc = 
> >> FeatureCollectionTools.addAttributeToFeatureCollection( oldFc, attrInfo, 
> >> clearOldFeatureCollection );
> >>
> >>        Feature[] features = (Feature[])newFc.getFeatures().toArray(new 
> >> Feature[0]);
> >>        Feature feat;
> >>        int numFeats = features.length, attrInd = 
> >> newFc.getFeatureSchema().getAttributeIndex(attrInfo.getUniqueAttributeName());
> >>
> >>        for (int i=0; i<numFeats; i++){
> >>            feat = features[i];
> >>            feat.setAttribute(attrInd, new Double(formula.getValue(feat)));
> >>
> >>            if (i%500 == 0)
> >>                logger.printDebug("done: " + i);
> >>        }
> >>        return newFc;
> >>    }
> >>
> >>    public static PirolFeatureCollection addAttributeToFeatureCollection( 
> >> FeatureCollection fc, AttributeInfo attrInfo ){
> >>        return FeatureCollectionTools.addAttributeToFeatureCollection(fc, 
> >> attrInfo.getUniqueAttributeName(), attrInfo.getAttributeType(), 
> >> attrInfo.getNullValue(), true);
> >>    }
> >>
> >>    public static PirolFeatureCollection addAttributeToFeatureCollection( 
> >> FeatureCollection fc, AttributeInfo attrInfo, boolean 
> >> clearOldFeatureCollection ){
> >>        return FeatureCollectionTools.addAttributeToFeatureCollection(fc, 
> >> attrInfo.getUniqueAttributeName(), attrInfo.getAttributeType(), 
> >> attrInfo.getNullValue(), clearOldFeatureCollection);
> >>    }
> >>
> >>    /**
> >>     * Method to add a new attribute to an existing FeatureCollection. 
> >> Since there is no "legal" way to
> >>     * add an attribute to a FeatureCollection, this method creates (and 
> >> returns) a new FeatureCollection with a new
> >>     * FeatureSchema to do this operation. If a layer is to be manipulated 
> >> the new FeatureCollection has to be set
> >>     * as THE FeatureCollection for the layer...
> >>     [EMAIL PROTECTED] fc the old feature collection
> >>     [EMAIL PROTECTED] attr name of the new attribute
> >>     [EMAIL PROTECTED] at type of the new attribute
> >>     [EMAIL PROTECTED] defaultVal the initial value for the attribute, 
> >> since we do not want NULL values in the attribute table
> >>     [EMAIL PROTECTED] clearOldFeatureCollection if true the old feature 
> >> collection will be erased to save RAM
> >>     [EMAIL PROTECTED] new FeatureCollection with a new FeatureSchema 
> >> including the new attribute
> >>     */
> >>    public static PirolFeatureCollection addAttributeToFeatureCollection( 
> >> FeatureCollection fc, String attr, AttributeType at, Object defaultVal, 
> >> boolean clearOldFeatureCollection ){
> >>        FeatureSchema fs = (FeatureSchema)fc.getFeatureSchema().clone();
> >>        fs.addAttribute(attr,at);
> >>
> >>        MetaInformationHandler mih = new 
> >> MetaInformationHandler(MetaInformationHandler.createPirolFeatureCollection(fc));
> >>
> >>        PirolFeatureCollection newFc = 
> >> MetaInformationHandler.createPirolFeatureCollection(new 
> >> FeatureDataset(fs));
> >>
> >>        if (mih.containsMetaInformation()){
> >>            newFc.setMetaInformation(mih.getExistentMetaInformationMap());
> >>        }
> >>        mih = null;
> >>
> >>        Feature feat, newFeat;
> >>
> >>        if (at.equals(AttributeType.INTEGER)){
> >>            if (Double.class.isInstance(defaultVal)){
> >>                defaultVal = new Integer( ((Double)defaultVal).intValue() );
> >>            }
> >>        }
> >>
> >>        Feature[] featArray = (Feature[])fc.getFeatures().toArray(new 
> >> Feature[0]);
> >>
> >>        if (clearOldFeatureCollection)
> >>            fc.clear();
> >>
> >>        int featuresDone = 0;
> >>
> >>        for ( int i=featArray.length-1; i>=0; i--, featuresDone++ ){
> >>            feat = featArray[i];
> >>
> >>            newFeat = 
> >> FeatureCollectionTools.copyFeatureAndSetFeatureSchema(feat,fs);
> >>            newFeat.setAttribute(attr, defaultVal);
> >>            newFc.add(newFeat);
> >>
> >>            if (i%10000 == 0 && i!=0){
> >>                featArray = 
> >> (Feature[])FeatureCollectionTools.resizeArray(featArray, featArray.length 
> >> - featuresDone);
> >>                featuresDone = 0;
> >>                if (i%50000 == 0){
> >>                    System.gc();
> >>                }
> >>            }
> >>        }
> >>
> >>        featArray = null;
> >>
> >>        return newFc;
> >>    }
> >>
> >>    /**
> >>     * Method to add a new attribute to an existing FeatureCollection. 
> >> Since there is no "legal" way to
> >>     * add an attribute to a FeatureCollection, this method creates (and 
> >> returns) a new FeatureCollection with a new
> >>     * FeatureSchema to do this operation. If a layer is to be manipulated 
> >> the new FeatureCollection has to be set
> >>     * as THE FeatureCollection for the layer...
> >>     [EMAIL PROTECTED] fc the old feature collection
> >>     [EMAIL PROTECTED] attr name of the new attribute
> >>     [EMAIL PROTECTED] at type of the new attribute
> >>     [EMAIL PROTECTED] defaultVal the initial value for the attribute, 
> >> since we do not want NULL values in the attribute table
> >>     [EMAIL PROTECTED] new FeatureCollection with a new FeatureSchema 
> >> including the new attribute
> >>     */
> >>    public static PirolFeatureCollection addAttributeToFeatureCollection( 
> >> FeatureCollection fc, String attr, AttributeType at, Object defaultVal ){
> >>        return FeatureCollectionTools.addAttributeToFeatureCollection(fc, 
> >> attr, at, defaultVal, true);
> >>    }
> >>
> >>    /**
> >>     * Adds multiple attributes to the FeatureCollection
> >>     [EMAIL PROTECTED] attributeInfos list containing the attributes (as 
> >> AttributeInfo objects) to be added
> >>     [EMAIL PROTECTED] a new FeatureCollection containing the old and the 
> >> new attributes
> >>     *
> >>     [EMAIL PROTECTED] AttributeInfo
> >>     */
> >>    public PirolFeatureCollection addAttributesToFeatureCollection( List 
> >> attributeInfos ){
> >>        return 
> >> FeatureCollectionTools.addAttributesToFeatureCollection(this.fc, 
> >> attributeInfos);
> >>    }
> >>
> >>    /**
> >>     * Adds multiple attributes to a FeatureCollection
> >>     [EMAIL PROTECTED] fc the source feature collection
> >>     [EMAIL PROTECTED] attributeInfos list containing the attributes (as 
> >> AttributeInfo objects) to be added
> >>     [EMAIL PROTECTED] a new FeatureCollection containing the old and the 
> >> new attributes
> >>     *
> >>     [EMAIL PROTECTED] AttributeInfo
> >>     */
> >>    public static PirolFeatureCollection addAttributesToFeatureCollection( 
> >> FeatureCollection fc, List<AttributeInfo> attributeInfos ){
> >>        return FeatureCollectionTools.addAttributesToFeatureCollection(fc, 
> >> (AttributeInfo[])attributeInfos.toArray(new AttributeInfo[0]));
> >>    }
> >>
> >>    public static PirolFeatureCollection addAttributesToFeatureCollection( 
> >> FeatureCollection fc, AttributeInfo[] attributeInfos ){
> >>        return FeatureCollectionTools.addAttributesToFeatureCollection(fc, 
> >> attributeInfos, true);
> >>    }
> >>
> >>    /**
> >>     * Adds multiple attributes to a FeatureCollection
> >>     [EMAIL PROTECTED] fc the source feature collection
> >>     [EMAIL PROTECTED] attributeInfos array containing the attributes to be 
> >> added
> >>     [EMAIL PROTECTED] clearOriginalFeatureCollection set true, if you want 
> >> to save RAM by
> >>     *clearing the original FeatureCollection, false if you still want to 
> >> use it.
> >>     [EMAIL PROTECTED] a new FeatureCollection containing the old and the 
> >> new attributes
> >>     */
> >>    public static PirolFeatureCollection addAttributesToFeatureCollection( 
> >> FeatureCollection fc, AttributeInfo[] attributeInfos, boolean 
> >> clearOriginalFeatureCollection ){
> >>        FeatureSchema fs = (FeatureSchema)fc.getFeatureSchema().clone();
> >>
> >>        MetaInformationHandler mih = new 
> >> MetaInformationHandler(MetaInformationHandler.createPirolFeatureCollection(fc));
> >>
> >>
> >>        AttributeInfo attrInfo;
> >>
> >>        for (int i=0; i<attributeInfos.length; i++){
> >>            attrInfo = attributeInfos[i];
> >>            fs.addAttribute(attrInfo.getUniqueAttributeName(), 
> >> attrInfo.getAttributeType());
> >>        }
> >>
> >>        PirolFeatureCollection newFc = 
> >> MetaInformationHandler.createPirolFeatureCollection(new 
> >> FeatureDataset(fs));
> >>
> >>        if (mih.containsMetaInformation()){
> >>            newFc.setMetaInformation(mih.getExistentMetaInformationMap());
> >>        }
> >>        mih = null;
> >>
> >>        Feature feat, newFeat;
> >>
> >>        Feature[] featArray = (Feature[])fc.getFeatures().toArray(new 
> >> Feature[0]);
> >>
> >>        if (clearOriginalFeatureCollection)
> >>                fc.clear();
> >>
> >>        int featuresDone = 0;
> >>
> >>        for ( int i=featArray.length-1; i>=0; i--, featuresDone++ ){
> >>            feat = featArray[i];
> >>
> >>            newFeat = 
> >> FeatureCollectionTools.copyFeatureAndSetFeatureSchema(feat,fs);
> >>
> >>
> >>            for (int j=0; j<attributeInfos.length; j++){
> >>                attrInfo = attributeInfos[j];
> >>                newFeat.setAttribute(attrInfo.getUniqueAttributeName(), 
> >> attrInfo.getNullValue());
> >>            }
> >>
> >>            newFc.add(newFeat);
> >>
> >>            if (i%10000 == 0 && i!=0){
> >>                featArray = 
> >> (Feature[])FeatureCollectionTools.resizeArray(featArray, featArray.length 
> >> - featuresDone);
> >>                featuresDone = 0;
> >>                if (i%50000 == 0){
> >>                    System.gc();
> >>                }
> >>                logger.printDebug("adding attribute, features left to do " 
> >> + i);
> >>            }
> >>        }
> >>        featArray = null;
> >>
> >>        return newFc;
> >>    }
> >>
> >>    /**
> >>    * Reallocates an array with a new size, and copies the contents
> >>    * of the old array to the new array.
> >>    * @param oldArray  the old array, to be reallocated.
> >>    * @param newSize   the new array size.
> >>    * @return          A new array with the same contents.
> >>    */
> >>    public static Object resizeArray (Object oldArray, int newSize) {
> >>       int oldSize = java.lang.reflect.Array.getLength(oldArray);
> >>       Class elementType = oldArray.getClass().getComponentType();
> >>       Object newArray = java.lang.reflect.Array.newInstance(
> >>             elementType,newSize);
> >>       int preserveLength = Math.min(oldSize,newSize);
> >>       if (preserveLength > 0)
> >>          System.arraycopy (oldArray,0,newArray,0,preserveLength);
> >>       return newArray;
> >>    }
> >>
> >>    public static double[] getMinMaxAttributeValue( Feature[] featArray, 
> >> FeatureSchema fs, String attr ){
> >>        double[] minmax = new double[]{ Double.MAX_VALUE, -Double.MAX_VALUE 
> >> };
> >>
> >>
> >>        if (fs.getAttributeType(attr) == AttributeType.INTEGER || 
> >> fs.getAttributeType(attr) == AttributeType.DOUBLE){
> >>
> >>            Feature feat;
> >>            double value;
> >>
> >>            for ( int i=featArray.length-1; i>=0; i-- ){
> >>                feat = featArray[i];
> >>
> >>                if (feat.getAttribute(attr) != null){
> >>                        value = 
> >> ObjectComparator.getDoubleValue(feat.getAttribute(attr));
> >>
> >>                        if (value<minmax[0]){
> >>                            minmax[0] = value;
> >>                        }
> >>                        if (value>minmax[1]){
> >>                            minmax[1] = value;
> >>                        }
> >>                } else {
> >>                    FeatureCollectionTools.logger.printMinorError("skipped 
> >> value (NULL), when checking min./max. values for Attribute " + attr);
> >>                }
> >>            }
> >>        }
> >>
> >>        return minmax;
> >>    }
> >>
> >>    public static double[] getMinMaxAttributeValue( FeatureCollection 
> >> features, String attr ){
> >>        return 
> >> FeatureCollectionTools.getMinMaxAttributeValue(FeatureCollectionTools.FeatureCollection2FeatureArray(features),
> >>  features.getFeatureSchema(), attr);
> >>    }
> >>
> >>
> >>    /**
> >>     * Converts a given FeatureCollection into an array of Feature, that 
> >> can - by far - be faster iterated.
> >>     [EMAIL PROTECTED] fc the feature Collection
> >>     [EMAIL PROTECTED] an array of the features of the feature collection
> >>     */
> >>    public static Feature[] FeatureCollection2FeatureArray( 
> >> FeatureCollection fc ){
> >>        return (Feature[])fc.getFeatures().toArray(new Feature[0]);
> >>    }
> >>
> >>    /**
> >>     * Converts a given list of features into an array of Feature, that can 
> >> - by far - be faster iterated.
> >>     [EMAIL PROTECTED] features list of features
> >>     [EMAIL PROTECTED] an array of the features of the feature list
> >>     */
> >>    public static Feature[] FeatureCollection2FeatureArray( List<Feature> 
> >> features ){
> >>        return (Feature[])features.toArray(new Feature[0]);
> >>    }
> >> }
> >>
> >> -------------------------------------------------------------------------
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> >> _______________________________________________
> >> Jump-pilot-devel mailing list
> >> Jump-pilot-devel@lists.sourceforge.net
> >> https://lists.sourceforge.net/lists/listinfo/jump-pilot-devel
> >>
> >>
> >
> > -------------------------------------------------------------------------
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> > Jump-pilot-devel@lists.sourceforge.net
> > https://lists.sourceforge.net/lists/listinfo/jump-pilot-devel
> >
> >
>
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