>> and you know what happens? OpenJUMP does not give any warning or 
>> message, but only polygons are stored to shapefiles.  What used to be 
>> points and lines seem to be stored as empty multipolygons into the 
>> polygon shapefile. Isn't this close to a bug? A kind of a solution 
>> with shapefiles could be to automatically split the layer to point, 
>> line and polygon shapefiles, but I wouldn't like to keep a bunch of up 
>> to 9 files together in the later processes.  And for sure I couldn't 
>> teach that in ten minutes.
>>   
> This should probably count as a bug.  JUMP should probably give an error 
> message and refuse to write out heterogeneous layers to shapefiles.

Ok, I just added a check, which throws an exception if different 
geometries are inside a layer. So it is now not anymore possible saving 
shape file with different geometries.
Thus, nobody will loose data because of that.

not the best solution, but sufficient for now

stefan

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