Have a look please https://github.com/hpoit/MLN.jl/tree/master/BN
On Friday, November 18, 2016 at 11:48:58 AM UTC-2, Yichao Yu wrote:
>
> On Thu, Nov 17, 2016 at 2:39 PM, Kevin Liu <kvt...@gmail.com <javascript:>>
> wrote:
> > Right, I need the instance of Factor
>
> Then use the instance of Factor.
>
> >
> > On Thursday, November 17, 2016 at 5:33:05 PM UTC-2, Yichao Yu wrote:
> >>
> >> On Thu, Nov 17, 2016 at 2:27 PM, Kevin Liu <kvt...@gmail.com> wrote:
> >> > I replaced Factor[:FactorMargin]() with Factor.FactorMargin() back
> >> > again.
> >> >
> >> > Still, for FactorOperations.jl on Atom, I get {UndefVarError: Factor
> not
> >> > defined} at the end of each block.
> >> >
> >> > Factor is defined on Factor.jl, and that file evaluates fine.
> >>
> >> AFAICT the `Factor`is a type so `Factor.FactorMargin` is definitely
> wrong.
> >>
> >> >
> >> > The main file, BN.jl, includes Factor.jl and FactorOperations.jl and
> >> > exports
> >> > Factor, and also evaluates fine.
> >> >
> >> > On Wednesday, November 16, 2016 at 11:25:24 PM UTC-2, Yichao Yu
> wrote:
> >> >>
> >> >> On Wed, Nov 16, 2016 at 7:24 PM, Kevin Liu <kvt...@gmail.com>
> wrote:
> >> >> > Hi Yichao!
> >> >>
> >> >> In general there's nothing from the code you posted that shows what
> >> >> you want to do.
> >> >>
> >> >> >
> >> >> > Here is the function from FactorOperations.jl
> >> >> >
> >> >> > function FactorDropMargin(A::Factor, Remove_var::Vector{String})
> >> >> > Remove_dims = indexin(Remove_var, A.var)
> >> >> > if any(Remove_dims==0)
> >> >> > error("Wrong variable!")
> >> >> > end
> >> >> >
> >> >> > Remain_var = symdiff(A.var, Remove_var)
> >> >> > Remain_dims = indexin(Remain_var, A.var)
> >> >> >
> >> >> > Factor[:FactorMargin](A, Remove_var, Remain_var, Remove_dims,
> >> >> > Remain_dims) # line 85
> >> >>
> >> >> Unless you overloaded getindex on this type (which you should
> include)
> >> >> you are construction a Vector of `Factor` from a symbol and then
> >> >> calling it. It's impossible to tell what you actually want to do.
> >> >>
> >> >> And as I previously mentioned, unless you are using PyCall, the
> issue
> >> >> you linked is totally unrelated to this.
> >> >>
> >> >> > end
> >> >> >
> >> >> > runtests.jl:
> >> >> >
> >> >> > @testset "Multiply and marginalize factor" begin
> >> >> >
> >> >> > A=Factor(["a", "b"],[3, 2],[0.5, 0.1, 0.3, 0.8, 0, 0.9])
> >> >> > B=Factor(["b", "c"],[2, 2],[0.5, 0.1, 0.7, 0.2])
> >> >> > C = FactorProduct(A, B)
> >> >> > FactorDropMargin(C, ["c"]) # line 19
> >> >> > FactorKeepMargin(C, ["b", "a"])
> >> >> > FactorPermute(ans, [2, 1])
> >> >> > FactorKeepMargin(C, ["a", "b"])
> >> >> >
> >> >> > end
> >> >> >
> >> >> > what I got on the REPL:
> >> >> >
> >> >> > julia> Pkg.test("BN")
> >> >> >
> >> >> > INFO: Testing BN
> >> >> >
> >> >> > Test Summary: |
> >> >> >
> >> >> > Define, permute factor, and call (var, card, val) | No tests
> >> >> >
> >> >> > Multiply and marginalize factor: Error During Test
> >> >> >
> >> >> > Got an exception of type ErrorException outside of a @test
> >> >> >
> >> >> > type DataType has no field FactorMargin
> >> >> >
> >> >> > in FactorDropMargin(::BN.Factor, ::Array{String,1}) at
> >> >> > /Users/Corvus/.julia/v0.5/BN/src/FactorOperations.jl:85
> >> >> >
> >> >> > in macro expansion; at
> >> >> > /Users/Corvus/.julia/v0.5/BN/test/runtests.jl:19
> >> >> > [inlined]
> >> >> >
> >> >> > in macro expansion; at ./test.jl:672 [inlined]
> >> >> >
> >> >> > in anonymous at ./<missing>:?
> >> >> >
> >> >> > in include_from_node1(::String) at ./loading.jl:488
> >> >> >
> >> >> > in include_from_node1(::String) at
> >> >> >
> >> >> >
> >> >> >
> /Applications/Julia-0.5.app/Contents/Resources/julia/lib/julia/sys.dylib:?
> >> >> >
> >> >> > in process_options(::Base.JLOptions) at ./client.jl:262
> >> >> >
> >> >> > in _start() at ./client.jl:318
> >> >> >
> >> >> > in _start() at
> >> >> >
> >> >> >
> >> >> >
> /Applications/Julia-0.5.app/Contents/Resources/julia/lib/julia/sys.dylib:?
> >> >> >
> >> >> > Test Summary: | Error Total
> >> >> >
> >> >> > Multiply and marginalize factor | 1 1
> >> >> >
> >> >> >
> >> >> > On Wednesday, November 16, 2016 at 10:02:48 PM UTC-2, Yichao Yu
> >> >> > wrote:
> >> >> >>
> >> >> >> On Wed, Nov 16, 2016 at 6:50 PM, Kevin Liu <kvt...@gmail.com>
> wrote:
> >> >> >> > From this issue https://github.com/JuliaPy/PyPlot.jl/issues/157
> I
> >> >> >> > understand
> >> >> >>
> >> >> >> ^^ This is irrelevant unless you are using PyCall
> >> >> >>
> >> >> >> >
> >> >> >> > `Factor[:FactorMargin](A, Remove_var, Remain_var, Remove_dims,
> >> >> >> > Remain_dims)`
> >> >> >> > (line 85 of FactorOperations.jl) should pass, as it does on
> Atom,
> >> >> >> > but
> >> >> >> > not on
> >> >> >> > the REPL, which throws
> >> >> >> >
> >> >> >> > Got an exception of type ErrorException outside of a @test
> >> >> >> >
> >> >> >> > type DataType has no field FactorMargin
> >> >> >> >
> >> >> >> > in FactorDropMargin(::BN.Factor, ::Array{String,1}) at
> >> >> >> > /Users/Corvus/.julia/v0.5/BN/src/FactorOperations.jl:85
> >> >> >>
> >> >> >> Impossible to tell without code.
> >> >> >>
> >> >> >> >
> >> >> >> >
> >> >> >> > Help, please.
>
