OK, I tried again with the latest nightlies. Now Pkg.init("ssh://
[email protected]/JuliaLang/METADATA.jl.git") succeeds. However, I'm still not 
able to add packages. Pkg.setprotocol!("ssh") does seem to work with 
Pkg.add though:

julia> Pkg.setprotocol!("ssh"); Pkg.add("ACME")
INFO: Cloning cache of ACME from ssh://github.com/HSU-ANT/ACME.jl.git
WARNING: The explicitly provided credentials were incompatible with the 
server's supported authentication methods
ERROR: Cannot clone ACME from ssh://github.com/HSU-ANT/ACME.jl.git. No 
errors
 in prefetch(::String, ::String, ::Array{String,1}) at ./pkg/cache.jl:56
 in resolve(::Dict{String,Base.Pkg.Types.VersionSet}, 
::Dict{String,Dict{VersionNumber,Base.Pkg.Types.Available}}, 
::Dict{String,Tuple{VersionNumber,Bool}}, 
::Dict{String,Base.Pkg.Types.Fixed}, ::Dict{String,VersionNumber}, 
::Set{String}) at ./pkg/entry.jl:512
 in resolve(::Dict{String,Base.Pkg.Types.VersionSet}, 
::Dict{String,Dict{VersionNumber,Base.Pkg.Types.Available}}, 
::Dict{String,Tuple{VersionNumber,Bool}}, 
::Dict{String,Base.Pkg.Types.Fixed}) at ./pkg/entry.jl:476
 in edit(::Function, ::String, ::Base.Pkg.Types.VersionSet, 
::Vararg{Base.Pkg.Types.VersionSet,N}) at ./pkg/entry.jl:30
 in (::Base.Pkg.Entry.##2#5{String,Base.Pkg.Types.VersionSet})() at 
./task.jl:309
 in sync_end() at ./task.jl:275
 in macro expansion at ./task.jl:284 [inlined]
 in add(::String, ::Base.Pkg.Types.VersionSet) at ./pkg/entry.jl:51
 in 
(::Base.Pkg.Dir.##2#3{Array{Any,1},Base.Pkg.Entry.#add,Tuple{String}})() at 
./pkg/dir.jl:31
 in 
cd(::Base.Pkg.Dir.##2#3{Array{Any,1},Base.Pkg.Entry.#add,Tuple{String}}, 
::String) at ./file.jl:59
 in #cd#1(::Array{Any,1}, ::Function, ::Function, ::String, 
::Vararg{Any,N}) at ./pkg/dir.jl:31
 in add(::String) at ./pkg/pkg.jl:100

On Monday, August 1, 2016 at 11:24:51 AM UTC-6, Tony Kelman wrote:
>
> I think Pkg.add should obey setprotocol!, it's likely a bug that Pkg.init 
> doesn't. The extra colon after .com probably is malformed so isn't the 
> first error correct? The second issue might be fixed by some authentication 
> changes that Keno just merged a few minutes ago, there should be binaries 
> that include that fix built in a few hours.
>
>
> On Monday, August 1, 2016 at 8:31:44 AM UTC-7, Daniel O'Malley wrote:
>>
>> I tried the Pkg.init("ssh://...") a couple different ways, but neither 
>> worked.
>>
>> Pkg.init("ssh://[email protected]:/JuliaLang/METADATA.jl.git")
>>
>> gave GitError(Code:EINVALIDSPEC, Class:Net, Malformed URL 
>> 'ssh://[email protected]:/JuliaLang/METADATA.jl.git').
>>
>> Pkg.init("ssh://[email protected]/JuliaLang/METADATA.jl.git")
>>
>> asked me about my ssh keys then resulted in an authentication failure. If 
>> I were to get Pkg.init() working in this way, Pkg.add and other Pkg 
>> functions would still have problems though, right?
>>
>> On Monday, August 1, 2016 at 9:09:22 AM UTC-6, Tony Kelman wrote:
>>>
>>> That could be considered a bug, Pkg.init should probably respect the 
>>> Pkg.setprotocol! setting, at least when using the DEFAULT_META value. You 
>>> should also be able to do Pkg.init("ssh://[email protected]:/
>>> JuliaLang/METADATA.jl.git") as a workaround to avoid having to go 
>>> through command-line git.
>>>
>>>
>>> On Monday, August 1, 2016 at 7:01:51 AM UTC-7, Daniel O'Malley wrote:
>>>>
>>>> Oh, sorry for the mixup. Doing a
>>>>
>>>> git clone ssh://[email protected]:/JuliaLang/METADATA.jl.git
>>>>
>>>> from a shell succeeds. I haven't had success trying to change the 
>>>> protocol with Pkg.setprotocol! though. Whether I do 
>>>> Pkg.setprotocol!("ssh"), Pkg.setprotocol!("git"), or 
>>>> Pkg.setprotocol!("notaprotocol"), Pkg.init() seems to always try to clone 
>>>> via https.
>>>>
>>>> On Sunday, July 31, 2016 at 10:31:38 PM UTC-6, Tony Kelman wrote:
>>>>>
>>>>> No, I meant ssh:// or git:// url's for packages.
>>>>>
>>>>>
>>>>> On Sunday, July 31, 2016 at 7:02:15 PM UTC-7, Daniel O'Malley wrote:
>>>>>>
>>>>>> Tony, thanks for the quick response and all the work you put into 
>>>>>> julia. It would be great to have the package system working for 
>>>>>> Mac/Linux 
>>>>>> from behind a proxy without needing to rebuild anything. If you need 
>>>>>> someone to help test from behind a proxy, please let me know. I'd be 
>>>>>> happy 
>>>>>> to do it.
>>>>>>
>>>>>> When you say "ssh remotes", do you mean something like 
>>>>>> addprocs(["machine1", "machine2"])? That does work for me, but I haven't 
>>>>>> tried addprocs'ing to a machine outside our network.
>>>>>>
>>>>>> On Sunday, July 31, 2016 at 6:12:12 PM UTC-6, Tony Kelman wrote:
>>>>>>>
>>>>>>> I believe you need to build libgit2 against libcurl in order for 
>>>>>>> proxies to work on linux and mac. We do not currently have it set up in 
>>>>>>> our 
>>>>>>> build system to do that in a self contained distributable way for 
>>>>>>> binaries, 
>>>>>>> but it might not be too hard to write the necessary makefile to make it 
>>>>>>> work.
>>>>>>>
>>>>>>> We were prioritizing getting ssh remotes to work again for the first 
>>>>>>> rc. Do ssh remotes work over proxies by any chance? I don't currently 
>>>>>>> have 
>>>>>>> immediate access to an environment behind a proxy to test this, but we 
>>>>>>> had 
>>>>>>> looked into setting one up that we could revisit.
>>>>>>>
>>>>>>

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