[
https://issues.apache.org/jira/browse/ARROW-4995?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=17662017#comment-17662017
]
Rok Mihevc commented on ARROW-4995:
-----------------------------------
This issue has been migrated to [issue
#21496|https://github.com/apache/arrow/issues/21496] on GitHub. Please see the
[migration documentation|https://github.com/apache/arrow/issues/14542] for
further details.
> [R] Make sure winbuilder tests pass for package
> -----------------------------------------------
>
> Key: ARROW-4995
> URL: https://issues.apache.org/jira/browse/ARROW-4995
> Project: Apache Arrow
> Issue Type: Improvement
> Components: R
> Affects Versions: 0.13.0
> Reporter: Javier Luraschi
> Assignee: Javier Luraschi
> Priority: Major
> Labels: pull-request-available
> Fix For: 0.13.0
>
> Time Spent: 5h 40m
> Remaining Estimate: 0h
>
> Current submission to winbuilder triggers the following errors:
> {code:java}
> * using log directory 'd:/RCompile/CRANguest/R-release/arrow.Rcheck'
> * using R version 3.5.3 (2019-03-11)
> * using platform: x86_64-w64-mingw32 (64-bit)
> * using session charset: ISO8859-1
> * checking for file 'arrow/DESCRIPTION' ... OK
> * this is package 'arrow' version '0.12.0.9000'
> * package encoding: UTF-8
> * checking CRAN incoming feasibility ... NOTE
> Maintainer: 'Javier Luraschi <jav...@rstudio.com>'
> New submission
> Version contains large components (0.12.0.9000)
> * checking package namespace information ... OK
> * checking package dependencies ... OK
> * checking if this is a source package ... OK
> * checking if there is a namespace ... OK
> * checking for hidden files and directories ... NOTE
> Found the following hidden files and directories:
> .travis.yml
> These were most likely included in error. See section 'Package
> structure' in the 'Writing R Extensions' manual.
> CRAN-pack does not know about
> .travis.yml
> * checking for portable file names ... OK
> * checking whether package 'arrow' can be installed ... OK
> * checking installed package size ... NOTE
> installed size is 8.6Mb
> sub-directories of 1Mb or more:
> R 1.9Mb
> libs 6.5Mb
> * checking package directory ... OK
> * checking DESCRIPTION meta-information ... OK
> * checking top-level files ... NOTE
> Non-standard file/directory found at top level:
> 'clang_format.sh'
> * checking for left-over files ... OK
> * checking index information ... OK
> * checking package subdirectories ... OK
> * checking R files for non-ASCII characters ... OK
> * checking R files for syntax errors ... OK
> * loading checks for arch 'i386'
> ** checking whether the package can be loaded ... OK
> ** checking whether the package can be loaded with stated dependencies ... OK
> ** checking whether the package can be unloaded cleanly ... OK
> ** checking whether the namespace can be loaded with stated dependencies ...
> OK
> ** checking whether the namespace can be unloaded cleanly ... OK
> ** checking loading without being on the library search path ... OK
> ** checking use of S3 registration ... OK
> * loading checks for arch 'x64'
> ** checking whether the package can be loaded ... OK
> ** checking whether the package can be loaded with stated dependencies ... OK
> ** checking whether the package can be unloaded cleanly ... OK
> ** checking whether the namespace can be loaded with stated dependencies ...
> OK
> ** checking whether the namespace can be unloaded cleanly ... OK
> ** checking loading without being on the library search path ... OK
> ** checking use of S3 registration ... OK
> * checking dependencies in R code ... OK
> * checking S3 generic/method consistency ... OK
> * checking replacement functions ... OK
> * checking foreign function calls ... OK
> * checking R code for possible problems ... [8s] OK
> * checking Rd files ... OK
> * checking Rd metadata ... OK
> * checking Rd line widths ... OK
> * checking Rd cross-references ... OK
> * checking for missing documentation entries ... OK
> * checking for code/documentation mismatches ... OK
> * checking Rd \usage sections ... OK
> * checking Rd contents ... OK
> * checking for unstated dependencies in examples ... OK
> * checking line endings in shell scripts ... OK
> * checking line endings in C/C++/Fortran sources/headers ... OK
> * checking line endings in Makefiles ... OK
> * checking compilation flags in Makevars ... OK
> * checking for GNU extensions in Makefiles ... OK
> * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
> * checking pragmas in C/C++ headers and code ... OK
> * checking compiled code ... OK
> * checking examples ...
> ** running examples for arch 'i386' ... [1s] OK
> ** running examples for arch 'x64' ... [1s] OK
> * checking for unstated dependencies in 'tests' ... OK
> * checking tests ...
> ** running tests for arch 'i386' ... [7s] ERROR
> Running 'testthat.R' [6s]
> Running the tests in 'tests/testthat.R' failed.
> Complete output:
> > # Licensed to the Apache Software Foundation (ASF) under one
> > # or more contributor license agreements. See the NOTICE file
> > # distributed with this work for additional information
> > # regarding copyright ownership. The ASF licenses this file
> > # to you under the Apache License, Version 2.0 (the
> > # "License"); you may not use this file except in compliance
> > # with the License. You may obtain a copy of the License at
> > #
> > # http://www.apache.org/licenses/LICENSE-2.0
> > #
> > # Unless required by applicable law or agreed to in writing,
> > # software distributed under the License is distributed on an
> > # "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
> > # KIND, either express or implied. See the License for the
> > # specific language governing permissions and limitations
> > # under the License.
> >
> > library(testthat)
> > library(arrow)
>
> Attaching package: 'arrow'
>
> The following object is masked from 'package:utils':
>
> timestamp
>
> The following objects are masked from 'package:base':
>
> array, table
>
> > library(tibble)
> >
> > test_check("arrow")
> -- 1. Error: read_table handles various input streams (ARROW-3450,
> ARROW-3505) (
> could not find function "defer"
> 1: local_tempfile() at testthat/test-Table.R:28
> 2: defer_parent(unlink(tf), ...)
> 3: eval(substitute(defer(expr, envir, priority), list(expr =
> substitute(expr), envir = parent.frame(2),
> priority = priority)), envir = parent.frame())
> 4: eval(substitute(defer(expr, envir, priority), list(expr =
> substitute(expr), envir = parent.frame(2),
> priority = priority)), envir = parent.frame())
>
> -- 2. Error: Can read csv file (@test-arrow-csv-.R#21)
> ------------------------
> could not find function "defer"
> 1: local_tempfile() at testthat/test-arrow-csv-.R:21
> 2: defer_parent(unlink(tf), ...)
> 3: eval(substitute(defer(expr, envir, priority), list(expr =
> substitute(expr), envir = parent.frame(2),
> priority = priority)), envir = parent.frame())
> 4: eval(substitute(defer(expr, envir, priority), list(expr =
> substitute(expr), envir = parent.frame(2),
> priority = priority)), envir = parent.frame())
>
> -- 3. Error: feather read/write round trip (@test-feather.R#23)
> ---------------
> could not find function "defer"
> 1: local_tempfile() at testthat/test-feather.R:23
> 2: defer_parent(unlink(tf), ...)
> 3: eval(substitute(defer(expr, envir, priority), list(expr =
> substitute(expr), envir = parent.frame(2),
> priority = priority)), envir = parent.frame())
> 4: eval(substitute(defer(expr, envir, priority), list(expr =
> substitute(expr), envir = parent.frame(2),
> priority = priority)), envir = parent.frame())
>
> -- 4. Error: feather handles columns = <names> (@test-feather.R#63)
> -----------
> could not find function "defer"
> 1: local_tempfile() at testthat/test-feather.R:63
> 2: defer_parent(unlink(tf), ...)
> 3: eval(substitute(defer(expr, envir, priority), list(expr =
> substitute(expr), envir = parent.frame(2),
> priority = priority)), envir = parent.frame())
> 4: eval(substitute(defer(expr, envir, priority), list(expr =
> substitute(expr), envir = parent.frame(2),
> priority = priority)), envir = parent.frame())
>
> -- 5. Error: feather handles columns = <integer> (@test-feather.R#76)
> ---------
> could not find function "defer"
> 1: local_tempfile() at testthat/test-feather.R:76
> 2: defer_parent(unlink(tf), ...)
> 3: eval(substitute(defer(expr, envir, priority), list(expr =
> substitute(expr), envir = parent.frame(2),
> priority = priority)), envir = parent.frame())
> 4: eval(substitute(defer(expr, envir, priority), list(expr =
> substitute(expr), envir = parent.frame(2),
> priority = priority)), envir = parent.frame())
>
> -- 6. Error: feather read/write round trip (@test-feather.R#89)
> ---------------
> could not find function "defer"
> 1: local_tempfile() at testthat/test-feather.R:89
> 2: defer_parent(unlink(tf), ...)
> 3: eval(substitute(defer(expr, envir, priority), list(expr =
> substitute(expr), envir = parent.frame(2),
> priority = priority)), envir = parent.frame())
> 4: eval(substitute(defer(expr, envir, priority), list(expr =
> substitute(expr), envir = parent.frame(2),
> priority = priority)), envir = parent.frame())
>
> -- 7. Error: arrow::table round trip (@test-read-write.R#87)
> ------------------
> could not find function "defer"
> 1: local_tempfile() at testthat/test-read-write.R:87
> 2: defer_parent(unlink(tf), ...)
> 3: eval(substitute(defer(expr, envir, priority), list(expr =
> substitute(expr), envir = parent.frame(2),
> priority = priority)), envir = parent.frame())
> 4: eval(substitute(defer(expr, envir, priority), list(expr =
> substitute(expr), envir = parent.frame(2),
> priority = priority)), envir = parent.frame())
>
> -- 8. Error: arrow::table round trip handles NA in integer and numeric
> (@test-re
> could not find function "defer"
> 1: local_tempfile() at testthat/test-read-write.R:117
> 2: defer_parent(unlink(tf), ...)
> 3: eval(substitute(defer(expr, envir, priority), list(expr =
> substitute(expr), envir = parent.frame(2),
> priority = priority)), envir = parent.frame())
> 4: eval(substitute(defer(expr, envir, priority), list(expr =
> substitute(expr), envir = parent.frame(2),
> priority = priority)), envir = parent.frame())
>
> -- 9. Error: RecordBatchFileWriter / RecordBatchFileReader roundtrips
> (@test-rea
> could not find function "defer"
> 1: local_tempfile() at testthat/test-read_record_batch.R:26
> 2: defer_parent(unlink(tf), ...)
> 3: eval(substitute(defer(expr, envir, priority), list(expr =
> substitute(expr), envir = parent.frame(2),
> priority = priority)), envir = parent.frame())
> 4: eval(substitute(defer(expr, envir, priority), list(expr =
> substitute(expr), envir = parent.frame(2),
> priority = priority)), envir = parent.frame())
>
> -- 10. Error: read_record_batch() handles (raw|Buffer|InputStream, Schema)
> (ARRO
> could not find function "defer"
> 1: read_record_batch(raw, schema) at testthat/test-read_record_batch.R:54
> 2: read_record_batch.raw(raw, schema)
> 3: close_on_exit(BufferReader(obj))
> 4: defer_parent(x$close(), ...)
> 5: eval(substitute(defer(expr, envir, priority), list(expr =
> substitute(expr), envir = parent.frame(2),
> priority = priority)), envir = parent.frame())
> 6: eval(substitute(defer(expr, envir, priority), list(expr =
> substitute(expr), envir = parent.frame(2),
> priority = priority)), envir = parent.frame())
>
> -- 11. Error: read_record_batch() can handle (Message, Schema) parameters
> (ARROW
> could not find function "defer"
> 1: close_on_exit(BufferReader(raw)) at testthat/test-read_record_batch.R:68
> 2: defer_parent(x$close(), ...)
> 3: eval(substitute(defer(expr, envir, priority), list(expr =
> substitute(expr), envir = parent.frame(2),
> priority = priority)), envir = parent.frame())
> 4: eval(substitute(defer(expr, envir, priority), list(expr =
> substitute(expr), envir = parent.frame(2),
> priority = priority)), envir = parent.frame())
>
> == testthat results
> ===========================================================
> OK: 723 SKIPPED: 2 FAILED: 11
> 1. Error: read_table handles various input streams (ARROW-3450, ARROW-3505)
> (@test-Table.R#28)
> 2. Error: Can read csv file (@test-arrow-csv-.R#21)
> 3. Error: feather read/write round trip (@test-feather.R#23)
> 4. Error: feather handles columns = <names> (@test-feather.R#63)
> 5. Error: feather handles columns = <integer> (@test-feather.R#76)
> 6. Error: feather read/write round trip (@test-feather.R#89)
> 7. Error: arrow::table round trip (@test-read-write.R#87)
> 8. Error: arrow::table round trip handles NA in integer and numeric
> (@test-read-write.R#117)
> 9. Error: RecordBatchFileWriter / RecordBatchFileReader roundtrips
> (@test-read_record_batch.R#26)
> 1. ...
>
> Error: testthat unit tests failed
> Execution halted
> ** running tests for arch 'x64' ... [7s] ERROR
> Running 'testthat.R' [7s]
> Running the tests in 'tests/testthat.R' failed.
> Complete output:
> > # Licensed to the Apache Software Foundation (ASF) under one
> > # or more contributor license agreements. See the NOTICE file
> > # distributed with this work for additional information
> > # regarding copyright ownership. The ASF licenses this file
> > # to you under the Apache License, Version 2.0 (the
> > # "License"); you may not use this file except in compliance
> > # with the License. You may obtain a copy of the License at
> > #
> > # http://www.apache.org/licenses/LICENSE-2.0
> > #
> > # Unless required by applicable law or agreed to in writing,
> > # software distributed under the License is distributed on an
> > # "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
> > # KIND, either express or implied. See the License for the
> > # specific language governing permissions and limitations
> > # under the License.
> >
> > library(testthat)
> > library(arrow)
>
> Attaching package: 'arrow'
>
> The following object is masked from 'package:utils':
>
> timestamp
>
> The following objects are masked from 'package:base':
>
> array, table
>
> > library(tibble)
> >
> > test_check("arrow")
> -- 1. Error: read_table handles various input streams (ARROW-3450,
> ARROW-3505) (
> could not find function "defer"
> 1: local_tempfile() at testthat/test-Table.R:28
> 2: defer_parent(unlink(tf), ...)
> 3: eval(substitute(defer(expr, envir, priority), list(expr =
> substitute(expr), envir = parent.frame(2),
> priority = priority)), envir = parent.frame())
> 4: eval(substitute(defer(expr, envir, priority), list(expr =
> substitute(expr), envir = parent.frame(2),
> priority = priority)), envir = parent.frame())
>
> -- 2. Error: Can read csv file (@test-arrow-csv-.R#21)
> ------------------------
> could not find function "defer"
> 1: local_tempfile() at testthat/test-arrow-csv-.R:21
> 2: defer_parent(unlink(tf), ...)
> 3: eval(substitute(defer(expr, envir, priority), list(expr =
> substitute(expr), envir = parent.frame(2),
> priority = priority)), envir = parent.frame())
> 4: eval(substitute(defer(expr, envir, priority), list(expr =
> substitute(expr), envir = parent.frame(2),
> priority = priority)), envir = parent.frame())
>
> -- 3. Error: feather read/write round trip (@test-feather.R#23)
> ---------------
> could not find function "defer"
> 1: local_tempfile() at testthat/test-feather.R:23
> 2: defer_parent(unlink(tf), ...)
> 3: eval(substitute(defer(expr, envir, priority), list(expr =
> substitute(expr), envir = parent.frame(2),
> priority = priority)), envir = parent.frame())
> 4: eval(substitute(defer(expr, envir, priority), list(expr =
> substitute(expr), envir = parent.frame(2),
> priority = priority)), envir = parent.frame())
>
> -- 4. Error: feather handles columns = <names> (@test-feather.R#63)
> -----------
> could not find function "defer"
> 1: local_tempfile() at testthat/test-feather.R:63
> 2: defer_parent(unlink(tf), ...)
> 3: eval(substitute(defer(expr, envir, priority), list(expr =
> substitute(expr), envir = parent.frame(2),
> priority = priority)), envir = parent.frame())
> 4: eval(substitute(defer(expr, envir, priority), list(expr =
> substitute(expr), envir = parent.frame(2),
> priority = priority)), envir = parent.frame())
>
> -- 5. Error: feather handles columns = <integer> (@test-feather.R#76)
> ---------
> could not find function "defer"
> 1: local_tempfile() at testthat/test-feather.R:76
> 2: defer_parent(unlink(tf), ...)
> 3: eval(substitute(defer(expr, envir, priority), list(expr =
> substitute(expr), envir = parent.frame(2),
> priority = priority)), envir = parent.frame())
> 4: eval(substitute(defer(expr, envir, priority), list(expr =
> substitute(expr), envir = parent.frame(2),
> priority = priority)), envir = parent.frame())
>
> -- 6. Error: feather read/write round trip (@test-feather.R#89)
> ---------------
> could not find function "defer"
> 1: local_tempfile() at testthat/test-feather.R:89
> 2: defer_parent(unlink(tf), ...)
> 3: eval(substitute(defer(expr, envir, priority), list(expr =
> substitute(expr), envir = parent.frame(2),
> priority = priority)), envir = parent.frame())
> 4: eval(substitute(defer(expr, envir, priority), list(expr =
> substitute(expr), envir = parent.frame(2),
> priority = priority)), envir = parent.frame())
>
> -- 7. Error: arrow::table round trip (@test-read-write.R#87)
> ------------------
> could not find function "defer"
> 1: local_tempfile() at testthat/test-read-write.R:87
> 2: defer_parent(unlink(tf), ...)
> 3: eval(substitute(defer(expr, envir, priority), list(expr =
> substitute(expr), envir = parent.frame(2),
> priority = priority)), envir = parent.frame())
> 4: eval(substitute(defer(expr, envir, priority), list(expr =
> substitute(expr), envir = parent.frame(2),
> priority = priority)), envir = parent.frame())
>
> -- 8. Error: arrow::table round trip handles NA in integer and numeric
> (@test-re
> could not find function "defer"
> 1: local_tempfile() at testthat/test-read-write.R:117
> 2: defer_parent(unlink(tf), ...)
> 3: eval(substitute(defer(expr, envir, priority), list(expr =
> substitute(expr), envir = parent.frame(2),
> priority = priority)), envir = parent.frame())
> 4: eval(substitute(defer(expr, envir, priority), list(expr =
> substitute(expr), envir = parent.frame(2),
> priority = priority)), envir = parent.frame())
>
> -- 9. Error: RecordBatchFileWriter / RecordBatchFileReader roundtrips
> (@test-rea
> could not find function "defer"
> 1: local_tempfile() at testthat/test-read_record_batch.R:26
> 2: defer_parent(unlink(tf), ...)
> 3: eval(substitute(defer(expr, envir, priority), list(expr =
> substitute(expr), envir = parent.frame(2),
> priority = priority)), envir = parent.frame())
> 4: eval(substitute(defer(expr, envir, priority), list(expr =
> substitute(expr), envir = parent.frame(2),
> priority = priority)), envir = parent.frame())
>
> -- 10. Error: read_record_batch() handles (raw|Buffer|InputStream, Schema)
> (ARRO
> could not find function "defer"
> 1: read_record_batch(raw, schema) at testthat/test-read_record_batch.R:54
> 2: read_record_batch.raw(raw, schema)
> 3: close_on_exit(BufferReader(obj))
> 4: defer_parent(x$close(), ...)
> 5: eval(substitute(defer(expr, envir, priority), list(expr =
> substitute(expr), envir = parent.frame(2),
> priority = priority)), envir = parent.frame())
> 6: eval(substitute(defer(expr, envir, priority), list(expr =
> substitute(expr), envir = parent.frame(2),
> priority = priority)), envir = parent.frame())
>
> -- 11. Error: read_record_batch() can handle (Message, Schema) parameters
> (ARROW
> could not find function "defer"
> 1: close_on_exit(BufferReader(raw)) at testthat/test-read_record_batch.R:68
> 2: defer_parent(x$close(), ...)
> 3: eval(substitute(defer(expr, envir, priority), list(expr =
> substitute(expr), envir = parent.frame(2),
> priority = priority)), envir = parent.frame())
> 4: eval(substitute(defer(expr, envir, priority), list(expr =
> substitute(expr), envir = parent.frame(2),
> priority = priority)), envir = parent.frame())
>
> == testthat results
> ===========================================================
> OK: 723 SKIPPED: 2 FAILED: 11
> 1. Error: read_table handles various input streams (ARROW-3450, ARROW-3505)
> (@test-Table.R#28)
> 2. Error: Can read csv file (@test-arrow-csv-.R#21)
> 3. Error: feather read/write round trip (@test-feather.R#23)
> 4. Error: feather handles columns = <names> (@test-feather.R#63)
> 5. Error: feather handles columns = <integer> (@test-feather.R#76)
> 6. Error: feather read/write round trip (@test-feather.R#89)
> 7. Error: arrow::table round trip (@test-read-write.R#87)
> 8. Error: arrow::table round trip handles NA in integer and numeric
> (@test-read-write.R#117)
> 9. Error: RecordBatchFileWriter / RecordBatchFileReader roundtrips
> (@test-read_record_batch.R#26)
> 1. ...
>
> Error: testthat unit tests failed
> Execution halted
> * checking PDF version of manual ... OK
> * DONE
> Status: 2 ERRORs, 4 NOTEs
> {code}
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