Had something to do with having the same surefire suite name in both calls. 
Hints came from comments in method add(SuiteResult sr) in TestResult.java 
<https://github.com/jenkinsci/junit-plugin/blob/master/src/main/java/hudson/tasks/junit/TestResult.java>
.

I changed the suite name in the second project's pom like so

 <plugins>
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-surefire-plugin</artifactId>
                <version>${version.surefire.plugin}</version>
                <configuration>
                    <properties>
                        <property>
                            <name>suitename</name>
                            <value>IntegrationSuite</value>
                        </property>
                    </properties>
                </configuration>
            </plugin>
    </plugins>



On Wednesday, 29 June 2016 12:10:09 UTC+10, Lionel Orellana wrote:
>
> Hello,
>
> I have to make two different maven invocations to build my app and run 
> some tests.
>
> This is all within the same node/stage at the moment. 
>
> 1)  sh "${global.mvnCmd} -Dmaven.test.failure.ignore clean install "
>      archive '**/*.ear, **/pom.xml'
>      step([$class: 'JUnitResultArchiver', testResults: 
> '**/target/surefire-reports/TEST-*.xml'])
>
>    
> 2)  sh "${global.mvnCmd} -f module/pom.xml -Dmaven.test.failure.ignore 
> test"
>      step([$class: 'JUnitResultArchiver', testResults: 
> '**/target/surefire-reports/TEST-*.xml'])
>
>
> There are tests failing in the second call but the build/pipeline is not 
> being marked as UNSTABLE even though the Test Results do show the failed 
> tests. If I comment out 1) then the build/pipeline does get marked as 
> UNSTABLE. 
>
> So it appears the JUnitResultArchiver can only set the result once? 
>
> The end goal is to run unit tests as part of 1) and exit if there are 
> failed tests (I can check the build result which would haven been set by 
> JUnitResultArchiver). If 1) is Ok we'll run longer tests with 2). But that 
> will only work if JUnitResultArchiver can set the build result the a second 
> time.
>
> Thanks
>
> Lionel.
>
>
>
>
>
>

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