The problem appears to be a newer version of the Build Graph View Plugin 
(v1.3):

https://wiki.jenkins-ci.org/display/JENKINS/Build+Graph+View+Plugin

I disabled this plugin by adding a .disabled extension 
to buildgraph-view.jpi file. Jenkins is now able to initialize the GUI.

I am running Jenkins 1.651.1 with JRE 1.7.80.

On Monday, May 16, 2016 at 12:34:26 PM UTC-4, Rich Sloan wrote:
>
> I updated some plugins and now when I start Jenkins I get the following on 
> start. I attached the err.log from the plugin install and the subsequent 
> errors. I did run a backup a couple of days ago, but I am unclear on how to 
> restore it without the GUI. I am running Windows 2008 R2 and Jenkins is 
> running on Java 1.8.0_66 
>
> hudson.util.HudsonFailedToLoad: org.jvnet.hudson.reactor.ReactorException: 
> java.lang.Error: java.lang.reflect.InvocationTargetException
>       at hudson.WebAppMain$3.run(WebAppMain.java:237)
> Caused by: org.jvnet.hudson.reactor.ReactorException: java.lang.Error: 
> java.lang.reflect.InvocationTargetException
>       at org.jvnet.hudson.reactor.Reactor.execute(Reactor.java:269)
>       at jenkins.InitReactorRunner.run(InitReactorRunner.java:44)
>       at jenkins.model.Jenkins.executeReactor(Jenkins.java:936)
>       at jenkins.model.Jenkins.<init>(Jenkins.java:817)
>       at hudson.model.Hudson.<init>(Hudson.java:83)
>       at hudson.model.Hudson.<init>(Hudson.java:79)
>       at hudson.WebAppMain$3.run(WebAppMain.java:225)
> Caused by: java.lang.Error: java.lang.reflect.InvocationTargetException
>       at hudson.init.TaskMethodFinder.invoke(TaskMethodFinder.java:110)
>       at hudson.init.TaskMethodFinder$TaskImpl.run(TaskMethodFinder.java:176)
>       at org.jvnet.hudson.reactor.Reactor.runTask(Reactor.java:282)
>       at jenkins.model.Jenkins$8.runTask(Jenkins.java:925)
>       at org.jvnet.hudson.reactor.Reactor$2.run(Reactor.java:210)
>       at org.jvnet.hudson.reactor.Reactor$Node.run(Reactor.java:117)
>       at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
>       at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
>       at java.lang.Thread.run(Unknown Source)
> Caused by: java.lang.reflect.InvocationTargetException
>       at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
>       at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
>       at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
>       at java.lang.reflect.Method.invoke(Unknown Source)
>       at hudson.init.TaskMethodFinder.invoke(TaskMethodFinder.java:106)
>       ... 8 more
> Caused by: java.lang.IndexOutOfBoundsException: Index: 0, Size: 0
>       at java.util.ArrayList.rangeCheck(Unknown Source)
>       at java.util.ArrayList.get(Unknown Source)
>       at hudson.ExtensionList.get(ExtensionList.java:171)
>       at 
> hudson.PluginManager$PluginUpdateMonitor.getInstance(PluginManager.java:1347)
>       at hudson.maven.PluginImpl.init(PluginImpl.java:58)
>       ... 13 more
>
>

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