I see the same problem when running a "Windows batch file" type build step 
on Windows slaves.
Maybe 1 out of 100 runs.
 
There was talk about this a year ago, but it was claimed to be fixed.  (I 
see it in ver 1.466.1)

On Friday, August 31, 2012 5:56:59 AM UTC-7, JanneG wrote:

> We're experiencing the same problem, seems like no one can give a hint on 
> what is causing it to randomly fail once a week.
> We're running Jenkins 1.467.
>
> BR,
>
> /Janne
>
> Den fredagen den 31:e augusti 2012 kl. 14:15:05 UTC+2 skrev Stefano 
> Perticoni:
>>
>> Dear Jenkins users,
>>
>> we are running Jenkins 1.472
>> http://scs03.cineca.it:9090/about/?
>>
>> and we are experiencing this strange error from some time on a linux 
>> build node:
>> http://scs03.cineca.it:9090/job/SCSSVN01_CI_LIB_MAF3_GCCDBG/:
>>
>> Error first line:
>>
>> 30-Aug-2012 11:50:56 ---> Debug: ("mafPluginOutFATAL: Unable to delete 
>> script file /tmp/hudson7088876974817491254.sh
>>
>>
>> Full log is available at the end of the email.
>>
>>
>> It seems that Jenkins is not able to delete a file even if Jenkins login 
>> user can do that: in fact by ssh the Jenkins user can both delete the file 
>> and run a successful build.
>>
>>
>> Any idea?
>>
>>
>> Thank you very much for your help.
>>
>>
>> Regards,
>>
>> Stefano
>>
>>
>> _______________________________________________
>>
>> Ing. Stefano Perticoni
>> Super Computing Solutions s.r.l.
>> http://www.scsitaly.com
>> Via Parini 1, 40033 Casalecchio di Reno BO, Italy
>> mailto: s.per...@scsitaly.com
>> _______________________________________________
>>
>>
>> 30-Aug-2012 11:50:56 ---> Debug: ("mafPluginOutFATAL: Unable to delete 
>> script file /tmp/hudson7088876974817491254.shhudson.util.IOException2 
>> <http://stacktrace.jenkins-ci.org/search?query=hudson.util.IOException2>: 
>> remote file operation failed: /tmp/hudson7088876974817491254.sh at 
>> hudson.remoting.Channel@10a1001:SCSSVN01
>>      at hudson.FilePath.act(FilePath.java:838) 
>> <http://stacktrace.jenkins-ci.org/search/?query=hudson.FilePath.act&entity=method>
>>      at hudson.FilePath.act(FilePath.java:824) 
>> <http://stacktrace.jenkins-ci.org/search/?query=hudson.FilePath.act&entity=method>
>>      at hudson.FilePath.delete(FilePath.java:1129) 
>> <http://stacktrace.jenkins-ci.org/search/?query=hudson.FilePath.delete&entity=method>
>>      at hudson.tasks.CommandInterpreter.perform(CommandInterpreter.java:92) 
>> <http://stacktrace.jenkins-ci.org/search/?query=hudson.tasks.CommandInterpreter.perform&entity=method>
>>      at hudson.tasks.CommandInterpreter.perform(CommandInterpreter.java:58) 
>> <http://stacktrace.jenkins-ci.org/search/?query=hudson.tasks.CommandInterpreter.perform&entity=method>
>>      at hudson.tasks.BuildStepMonitor$1.perform(BuildStepMonitor.java:19) 
>> <http://stacktrace.jenkins-ci.org/search/?query=hudson.tasks.BuildStepMonitor$1.perform&entity=method>
>>      at 
>> hudson.model.AbstractBuild$AbstractBuildExecution.perform(AbstractBuild.java:717)
>>  
>> <http://stacktrace.jenkins-ci.org/search/?query=hudson.model.AbstractBuild$AbstractBuildExecution.perform&entity=method>
>>      at hudson.model.Build$BuildExecution.build(Build.java:199) 
>> <http://stacktrace.jenkins-ci.org/search/?query=hudson.model.Build$BuildExecution.build&entity=method>
>>      at hudson.model.Build$BuildExecution.doRun(Build.java:160) 
>> <http://stacktrace.jenkins-ci.org/search/?query=hudson.model.Build$BuildExecution.doRun&entity=method>
>>      at 
>> hudson.model.AbstractBuild$AbstractBuildExecution.run(AbstractBuild.java:499)
>>  
>> <http://stacktrace.jenkins-ci.org/search/?query=hudson.model.AbstractBuild$AbstractBuildExecution.run&entity=method>
>>      at hudson.model.Run.execute(Run.java:1488) 
>> <http://stacktrace.jenkins-ci.org/search/?query=hudson.model.Run.execute&entity=method>
>>      at hudson.model.FreeStyleBuild.run(FreeStyleBuild.java:46) 
>> <http://stacktrace.jenkins-ci.org/search/?query=hudson.model.FreeStyleBuild.run&entity=method>
>>      at hudson.model.ResourceController.execute(ResourceController.java:88) 
>> <http://stacktrace.jenkins-ci.org/search/?query=hudson.model.ResourceController.execute&entity=method>
>>      at hudson.model.Executor.run(Executor.java:236) 
>> <http://stacktrace.jenkins-ci.org/search/?query=hudson.model.Executor.run&entity=method>
>> Caused by: hudson.remoting.ChannelClosedException 
>> <http://stacktrace.jenkins-ci.org/search?query=hudson.remoting.ChannelClosedException>:
>>  channel is already closed
>>      at hudson.remoting.Channel.send(Channel.java:492) 
>> <http://stacktrace.jenkins-ci.org/search/?query=hudson.remoting.Channel.send&entity=method>
>>      at hudson.remoting.Request.call(Request.java:129) 
>> <http://stacktrace.jenkins-ci.org/search/?query=hudson.remoting.Request.call&entity=method>
>>      at hudson.remoting.Channel.call(Channel.java:663) 
>> <http://stacktrace.jenkins-ci.org/search/?query=hudson.remoting.Channel.call&entity=method>
>>      at hudson.FilePath.act(FilePath.java:831) 
>> <http://stacktrace.jenkins-ci.org/search/?query=hudson.FilePath.act&entity=method>
>>      ... 13 more
>> Caused by: java.io.IOException: Unexpected termination of the channel
>>      at 
>> hudson.remoting.SynchronousCommandTransport$ReaderThread.run(SynchronousCommandTransport.java:50)
>> Caused by: java.io.EOFException
>>      at java.io.ObjectInputStream$BlockDataInputStream.peekByte(Unknown 
>> Source)
>>      at java.io.ObjectInputStream.readObject0(Unknown Source)
>>      at java.io.ObjectInputStream.readObject(Unknown Source)
>>      at hudson.remoting.Command.readFrom(Command.java:90)
>>      at 
>> hudson.remoting.ClassicCommandTransport.read(ClassicCommandTransport.java:59)
>>      at 
>> hudson.remoting.SynchronousCommandTransport$ReaderThread.run(SynchronousCommandTransport.java:48)
>> FATAL: hudson.remoting.RequestAbortedException: java.io.IOException: 
>> Unexpected termination of the channelhudson.remoting.RequestAbortedException 
>> <http://stacktrace.jenkins-ci.org/search?query=hudson.remoting.RequestAbortedException>:
>>  hudson.remoting.RequestAbortedException: java.io.IOException: Unexpected 
>> termination of the channel
>>      at hudson.remoting.Request.call(Request.java:174) 
>> <http://stacktrace.jenkins-ci.org/search/?query=hudson.remoting.Request.call&entity=method>
>>      at hudson.remoting.Channel.call(Channel.java:663) 
>> <http://stacktrace.jenkins-ci.org/search/?query=hudson.remoting.Channel.call&entity=method>
>>      at 
>> hudson.remoting.RemoteInvocationHandler.invoke(RemoteInvocationHandler.java:158)
>>  
>> <http://stacktrace.jenkins-ci.org/search/?query=hudson.remoting.RemoteInvocationHandler.invoke&entity=method>
>>      at $Proxy35.join(Unknown Source)
>>      at hudson.Launcher$RemoteLauncher$ProcImpl.join(Launcher.java:861)
>>      at hudson.Launcher$ProcStarter.join(Launcher.java:345)
>>      at hudson.tasks.CommandInterpreter.perform(CommandInterpreter.java:82)
>>      at hudson.tasks.CommandInterpreter.perform(CommandInterpreter.java:58)
>>      at hudson.tasks.BuildStepMonitor$1.perform(BuildStepMonitor.java:19)
>>      at 
>> hudson.model.AbstractBuild$AbstractBuildExecution.perform(AbstractBuild.java:717)
>>      at hudson.model.Build$BuildExecution.build(Build.java:199)
>>      at hudson.model.Build$BuildExecution.doRun(Build.java:160)
>>      at 
>> hudson.model.AbstractBuild$AbstractBuildExecution.run(AbstractBuild.java:499)
>>      at hudson.model.Run.execute(Run.java:1488)
>>      at hudson.model.FreeStyleBuild.run(FreeStyleBuild.java:46)
>>      at hudson.model.ResourceController.execute(ResourceController.java:88)
>>      at hudson.model.Executor.run(Executor.java:236)
>> Caused by: hudson.remoting.RequestAbortedException: java.io.IOException: 
>> Unexpected termination of the channel
>>      at hudson.remoting.Request.abort(Request.java:299)
>>      at hudson.remoting.Channel.terminate(Channel.java:719)
>>      at 
>> hudson.remoting.SynchronousCommandTransport$ReaderThread.run(SynchronousCommandTransport.java:69)
>> Caused by: java.io.IOException: Unexpected termination of the channel
>>      at 
>> hudson.remoting.SynchronousCommandTransport$ReaderThread.run(SynchronousCommandTransport.java:50)
>> Caused by: java.io.EOFException
>>      at java.io.ObjectInputStream$BlockDataInputStream.peekByte(Unknown 
>> Source)
>>      at java.io.ObjectInputStream.readObject0(Unknown Source)
>>      at java.io.ObjectInputStream.readObject(Unknown Source)
>>      at hudson.remoting.Command.readFrom(Command.java:90)
>>      at 
>> hudson.remoting.ClassicCommandTransport.read(ClassicCommandTransport.java:59)
>>      at 
>> hudson.remoting.SynchronousCommandTransport$ReaderThread.run(SynchronousCommandTransport.java:48)
>>
>>
>>

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