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Further update, the following combination works:
1. Workspace cleanup plugin configured to exclude files and directories matching the pattern .svn/**
2. Subversion plugin configured to do "svn update as much as possible" OR "svn update as much as possible with svn revert before update"
Using the fresh checkout mode deletes everything in the target directory.
Correct me if I am wrong but the mode "svn update as much as possible" still has the possibility of deleting the entire Jenkins workspace contents if the plugin decided it needed to do so. I guess the recommended practice should be to always checkout to a specific directory within the Jenkins workspace rather than the workspace root?