I just spotted Daniel's comment about jenkins-common. The fact that /var/lib/dpkg/info/jenkins-common.md5sums exists suggests that it is the Debian distribution package that is installed and not the upstream packaged version.

This is confirmed by checking the Debian distribution .deb file

$ wget http://ftp.uk.debian.org/debian/pool/main/j/jenkins/jenkins-common_1.565.2-2_all.deb
s$ mkdir jenkins-common_1.565.2-2_all
$ dpkg-deb -R jenkins-common_1.565.2-2_all.deb jenkins-common_1.565.2-2_all
$ md5sum jenkins-common_1.565.2-2_all/usr/share/jenkins/jenkins.war
2cc48f1f0341b8c54659e0af73cc3115  jenkins-common_1.565.2-2_all/usr/share/jenkins/jenkins.war
$ grep jenkins.war jenkins-common_1.565.2-2_all/DEBIAN/control  md5sums
$ grep jenkins.war jenkins-common_1.565.2-2_all/DEBIAN/md5sums
2cc48f1f0341b8c54659e0af73cc3115  usr/share/jenkins/jenkins.war

Conclusion this is a Debian project issue and not a Jenkins upstream issue.

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