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There was an existing empty git repo in the temp folder. I removed it and created a .git file as suggested, manually kicked off the build, and it all worked fine.
However, when initiating a build via remote polling I get this:
Started on 20/03/2014 3:59:54 PM Using strategy: Default [poll] Last Built Revision: Revision be2c3d7df7fa6eb0de12b3b7b50c1180ad63cb2f (origin/master) using .gitcredentials to set credentials Could not remove the credential section from the git configuration FATAL: hudson.plugins.git.GitException: Command "git init" returned status code 128: stdout: stderr: fatal: Invalid gitfile format: C:/DOCUME~1/!SYSCA~1/LOCALS~1/Temp/.git