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I've run into this as well. It has something to do with concurrent msys processes. I've reported my findings to the msys and msysgit mailing lists. I haven't had time to really dig into it and figure out what's going on.
I've done a few things to try and work around the issue:
def print_exec_corrupt_check(args): """Prints a command to be executed and then executes it """ cmdline = " ".join(args)
Possible future workarounds: