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If you were using wildcards in the branch names, then a bug in git-client-plugin versions prior to 1.6.2 might be affecting you. The bug is exposed only if the branch name contains wildcards, so if your branch name was not using wildcards, then that bug is not the problem.
The bug was discovered while creating automated tests. I don't think there is any bug report which describes it. If you want to read the details of the bug, refer to https://github.com/jenkinsci/git-client-plugin/commit/e5e75d5a100905c0d5b332bbde3642e96ffe10a9 .