It seems I had a slightly different problem.
The git plugin didn't exclude commits done by jenkins, which is what I wanted.
I had to use "Force polling using workspace" feature to make it ignore commits done by jenkins, after upgrade to newer version.
Didn't seems obvious to me, that it should be needed. Going through the code it would never reach the isRevExcluded method.
It would always return from within if statement

GitSCM.java:483
// fast remote polling needs a single branch and an existing last build
        if (getExtensions().get(DisableRemotePoll.class)==null && singleBranch != null && buildData.lastBuild != null && buildData.lastBuild.getMarked() != null) {
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