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After some analysis of my previous script I realized it contained a lot of false positives possibly due to years of accumulated history of broken builds, java crashes, wrong rsync of jobs between servers, etc, that lead to the following most common problems:
Since these happen often I created some scripts to:
NOTE: to effectively apply the cleanups first run the script without '-c' to run in preview mode and review the suggestions, when ready to apply them shutdown Jenkins first so that there are no files pending in memory to be written to file system.
Tested in RHEL6 and Solaris 10 (with gnu utils)