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Wow the new version of this plugin completely broke my jobs. I have a single symlink from one directory to another (non-recursive) and my builds refuse to update, showing the same "Cannot delete file" error.
I don't think JGit handles symlinks at all does it? I remember reading something a while back about the JGit team not planning on building in symlink support at all until Java gets native support for symlinks. If that's still the case then migrating to JGit is a disastrous idea for those of us in the Linux world.
And what's this about Git CLI being fragile, yada yada? Git CLI has a porcelain mode so that tools can rely on it without worrying about version or output fragility.