Yes, I look to have the same issue, we are running Jenkins as a windows service on a virtualised Win2008 server and get the following when we try to do any updates - even after supplying the proxy details in the advanced tab (we have configured proxy exactly as it is setup in IE internet options, and the username provided is the same domain user that the service runs under - this user has proxy access, surfing the web from the server works when logged in as this user):

Checking internet connectivity
Checking update center connectivity
java.io.IOException: Authentication failure at sun.net.www.protocol.http.HttpURLConnection.getInputStream(Unknown Source) at hudson.model.UpdateCenter$UpdateCenterConfiguration.testConnection(UpdateCenter.java:737) at hudson.model.UpdateCenter$UpdateCenterConfiguration.checkUpdateCenter(UpdateCenter.java:586) at hudson.model.UpdateCenter$ConnectionCheckJob.run(UpdateCenter.java:884) at java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source) at java.util.concurrent.FutureTask$Sync.innerRun(Unknown Source) at java.util.concurrent.FutureTask.run(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) at java.lang.Thread.run(Unknown Source)

I see this issue on StackOverflow saying to supply parms to the JRE directly when starting Jenkins, but am unsure as to how we could do this with the windows service setup - in any case from the comment above, it sounds as if it should work when the service user has proxy access:

http://stackoverflow.com/questions/1975564/how-can-i-get-hudson-to-update-through-proxy

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