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https://issues.jenkins-ci.org/browse/JENKINS-12545?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=160970#comment-160970
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Carsten Brandt commented on JENKINS-12545:
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might be expected behavior when they are dependend:

http://jenkins.361315.n4.nabble.com/Building-multiple-branches-with-Jenkins-td3547909.html
                
> Jenkins should build all tracked branches that have changed when triggered by 
> Github
> ------------------------------------------------------------------------------------
>
>                 Key: JENKINS-12545
>                 URL: https://issues.jenkins-ci.org/browse/JENKINS-12545
>             Project: Jenkins
>          Issue Type: Bug
>          Components: github
>         Environment: Jenkins 1.448, Github-api plugin 1.16, Github plugin 
> 1.0, Git plugin 1.1.15
> Ubuntu 9.04
>            Reporter: Leon Miller-Out
>              Labels: git, github, webhook
>
> I have several projects configured to build multiple branches and set to 
> build when changes are pushed to Github. For example, several projects have 
> origin/master and origin/development registered. It seems to build the 
> correct branch when I push to a single branch on Github, but it fails to 
> behave as expected in the following situations:
> 1. If I push to two branches at once, only one of them gets built. It should 
> build both of them. This probably has something to do with the changelog for 
> 1.1.12 at https://wiki.jenkins-ci.org/display/JENKINS/Git+Plugin that talks 
> about picking branches.
> 2. If I push to one branch, then push to a second branch while the first is 
> being built, the second one never gets built.
> This bug seems to force me to set up a separate job for each branch I want to 
> build, which works poorly with the Github webhook (it build all of the 
> branches every time). I can't switch to polling (I think) because my slave 
> systems are volatile and Jenkins seems to lose track of which ref was built 
> last when the slave it was built on goes away.

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