I missed something that may be very important: I find it really strange, that the exception log reads:
java.io.FileNotFoundException: F:\Indexes\index1\_16f6.fnm (The system cannot find the file specified) at java.io.RandomAccessFile.open(Native Method) at java.io.RandomAccessFile.<init>(RandomAccessFile.java:212) at org.apache.lucene.store.FSIndexInput$Descriptor.<init>(FSDirectory.java:425) at org.apache.lucene.store.FSIndexInput.<init>(FSDirectory.java:434) at org.apache.lucene.store.FSDirectory.openInput(FSDirectory.java:324) at org.apache.lucene.index.FieldInfos.<init>(FieldInfos.java:56) at org.apache.lucene.index.SegmentReader.initialize(SegmentReader.java:144) at org.apache.lucene.index.SegmentReader.get(SegmentReader.java:129) at org.apache.lucene.index.SegmentReader.get(SegmentReader.java:110) at org.apache.lucene.index.IndexReader$1.doBody(IndexReader.java:154) at org.apache.lucene.store.Lock$With.run(Lock.java:109) at org.apache.lucene.index.IndexReader.open(IndexReader.java:143) at org.apache.lucene.index.IndexReader.open(IndexReader.java:127) at org.apache.lucene.search.IndexSearcher.<init>(IndexSearcher.java:42)
After all, the Lucene's CFS format is abstraction over the OS's native FS and the App should not be trying to open a native FS file named *.fnm when it is supposed to open the corresponding *.cfs file and "manually" extract the *.fnm file from it.
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