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https://issues.apache.org/jira/browse/FLINK-17918?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=17124941#comment-17124941
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Piotr Nowojski commented on FLINK-17918:
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I think [~jark] you are right, we have also checked the remaining tests with 
[~AHeise] yesterday and it seems there is at least one more bug. Probably on 
our side that indeed has something to do with the two input operators. Anyway, 
let's split the issues and use this ticket for solving the `LIMIT`, we can 
create new tickets for the remaining issues.

> Blink Jobs are loosing data on recovery
> ---------------------------------------
>
>                 Key: FLINK-17918
>                 URL: https://issues.apache.org/jira/browse/FLINK-17918
>             Project: Flink
>          Issue Type: Bug
>          Components: Runtime / Checkpointing, Table SQL / Runtime
>    Affects Versions: 1.11.0
>            Reporter: Piotr Nowojski
>            Assignee: Jark Wu
>            Priority: Blocker
>              Labels: pull-request-available
>             Fix For: 1.11.0
>
>
> After trying to enable unaligned checkpoints by default, a lot of Blink 
> streaming SQL/Table API tests containing joins or set operations are throwing 
> errors that are indicating we are loosing some data (full records, without 
> deserialisation errors). Example errors:
> {noformat}
> [ERROR] Failures: 
> [ERROR]   JoinITCase.testFullJoinWithEqualPk:775 expected:<List(1,1, 2,2, 
> 3,3, null,4, null,5)> but was:<List(2,2, 3,3, null,1, null,4, null,5)>
> [ERROR]   JoinITCase.testStreamJoinWithSameRecord:391 expected:<List(1,1,1,1, 
> 1,1,1,1, 2,2,2,2, 2,2,2,2, 3,3,3,3, 3,3,3,3, 4,4,4,4, 4,4,4,4, 5,5,5,5, 
> 5,5,5,5)> but was:<List()>
> [ERROR]   SemiAntiJoinStreamITCase.testAntiJoin:352 expected:<0> but was:<1>
> [ERROR]   SetOperatorsITCase.testIntersect:55 expected:<MutableList(1,1,Hi, 
> 2,2,Hello, 3,2,Hello world)> but was:<List()>
> [ERROR]   JoinITCase.testJoinPushThroughJoin:1272 expected:<List(1,0,Hi, 
> 2,1,Hello, 2,1,Hello world)> but was:<List(2,1,Hello, 2,1,Hello world)>
> {noformat}
>  



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