You can try lux <https://bitbucket.org/kfj/pv>. If you have a bracket in a 
PTO, try and invoke lux like this:

lux --deghost=yes my.pto

This uses lux' 'quorate' blending mode, where pixels which are similar on 
several source images are favoured and outliers are suppressed. For now, 
lux does not offer an option to do this with all stacks in a stacked 
panorama, so you'd have to deghost the stacks individually, then stitch the 
results. It may not be good for tree branches, though, because you need 
several images to agree, and with moving branches they may all be 
different. It's more for removing true 'ghosts' like people walking through 
the set.

-- 
A list of frequently asked questions is available at: 
http://wiki.panotools.org/Hugin_FAQ
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