Here's the pasted man cpclean :

NAME
cpclean - Remove wrong control points by statistical methods

SYNOPSIS
cpclean [options] input.pto

DESCRIPTION
cpclean uses statistical methods to remove wrong control points.

Step 1 optimises all images pairs, calculates for each pair mean and standard 
deviation and removes all
control points with error bigger than mean+n*sigma.

Step 2 optimises the whole panorama, calculates mean and standard deviation for 
all control points and
removes all control points with error bigger than mean+n*sigma.

OPTIONS
--output|-o output.pto
Output Hugin PTO file. Default: '<filename>_clean.pto'.

--max-distance|-n num
distance factor for checking (default: 2)

--pairwise-checking|-p
do only pairwise optimisation (skip step 2)

--whole-pano-checking|-w
do optimise whole panorama (skip step 1)

--dont-optimize|-s
skip optimisation step when optimising the whole panorama

--check-line-cp|-l
also include line control points for calculation and filtering in step 2

--help|-h
shows help

AUTHORS
Thomas Modes
"Version: 2020.0.0" 2020-12-29 CPCLEAN(1)

There are a few things in it that I find a bit confusing :

- There seems to be an inconsistency in the formulations of

- do optimise whole panorama (skip step 1)
and
- do only pairwise optimisation (skip step 2)
Shouldn't the first one say
- only optimise whole panorama (skip step 1) ?
And in any case it's not just the optimization but also the control point 
removal that gets skipped, so why even mention it instead of simply saying skip 
step 1 or 2 ?
- When using the --dont-optimize option on a pto, the terminal outputs

- Skipping optimisation, current image positions will be used.
But the manual says "when optimising the whole panorama", meaning it only skips 
the optimisation to step 2. So wouldn't the images move in step 1 ?

-- 
A list of frequently asked questions is available at: 
http://wiki.panotools.org/Hugin_FAQ
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