Am Samstag, 20. Oktober 2018 08:41:15 UTC+2 schrieb Geoffrey Liu:
>
>
> Maybe there is some philosophy behind why this is the behavior. But I 
> would really like a way to align the images in all my stacks at once 
> without having to go through this laborious process! Anybody aware of 
> something I might be missing?
>

Unlink the image positions in the stacks. Cpfind multirow strategy already 
handles stacks. But when the position of the images is linked it assumes 
the images in the stacks are already aligned and does not search cp inside 
each stack. 
If you insist on align_image_stack there is the setting "Cpfind 
(multirow/stacked)" which runs align_image_stack on each stack and then 
link all stacks with cpfind. Or you can create your own setting in the 
control points detectors.

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