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4th INTERNATIONAL CONFERENCE ON ALGORITHMS FOR COMPUTATIONAL BIOLOGY
AlCoB 2017
Aveiro, Portugal
June 5-6, 2017
Organized by:
Center for Research & Development in Mathematics and Applications (CIDMA)
Institute of Electronics and Informatics Engineering of Aveiro (IEETA)
University of Aveiro
Research Group on Mathematical Linguistics (GRLMC)
Rovira i Virgili University
http://grammars.grlmc.com/AlCoB2017/
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PROGRAM
Monday, June 5
09:00 - 09:30 Registration
09:30 - 09:40 Opening
09:40 - 10:30 Michael Biehl: Biomedical Applications of Prototype Based
Classifiers and Relevance Learning - Invited lecture
10:30 - 11:00 Coffee break
11:00 - 11:50
Stefano Beretta, Paola Bonizzoni, Luca Denti, Marco Previtali and Raffaella
Rizzi: Mapping RNA-seq Data to a Transcript Graph via Approximate Pattern
Matching to a Hypertext
Alessio Conte, Roberto Grossi, Andrea Marino, Lorenzo Tattini and Luca Versari:
A Fast Algorithm for Large Common Connected Induced Subgraphs
11:50 - 12:05 Break
12:05 - 12:55
Javlon E. Isomurodov, Alexander A. Loboda and Alexey A. Sergushichev: Ranking
Vertices for Active Module Recovery Problem
John L. Pfaltz: Computational Processes that Appear to Model Human Memory
12:55 - 14:25 Lunch
14:25 - 15:15
Philip J. Gerrish and Nick Hengartner: Inferring the Distribution of Fitness
Effects (DFE) of Newly-arising Mutations Using Samples Taken from Evolving
Populations in Real Time
Jesper Jansson, Ramesh Rajaby and Wing-Kin Sung: An Efficient Algorithm for the
Rooted Triplet Distance between Galled Trees
15:15 - 15:30 Break and Group photo
15:30 - 16:20 Benedict Paten: Describing the Local Structure of Sequence
Graphs - Invited lecture
16:20 - 16:35 Break
16:35 - 18:05 Poster presentations
Martin Ayling and Richard Leggett. MetaCortex: Assembling Variation in
Metagenomics
Gregory Farrant, Hoebeke Mark, Frédéric Partensky, Gwendoline Andrès, Erwan
Corre and Laurence Garczarek. WiseScaffolder: An Algorithm for the
Semi-automatic Scaffolding of Next Generation Sequencing Data
Daniel Figueiredo and Eugénio Rocha. sDL: A Prover for Hybrid Systems
César González, Mariano Pérez-Martínez, Juan M. Orduña, Javier Chaves-Martinez
and Ana Barbara Garcia-Garcia. On the Use of Bit Arrays in the Detection of DNA
Regions with Methylated Cytosines
Morteza Hosseini, Diogo Pratas and Armando J. Pinho. Quantifying Inverted
Repeats in DNA Sequences
Haneen Najjar, Nagam Khoury and Alexander Bolshoy. Quasi-omnipresent N-grams in
M Prokaryotic Genomes
John Santerre, James Davis, Fangfang Xia and Rick Stevens. Machine Learning for
the Phenotype to Genotype Problem
Antonio J. Tallón-Ballesteros and María Rodríguez-Romero. Multilayer Perceptron
Based on Hyperbolic Tangent Hidden Nodes. An Experimental Study
Antonio J. Tallón-Ballesteros, Luis Rus-Pegalajar, María Rodríguez-Romero and
Jonathan E. Benavides-Vallejo. Ranking-based Feature Selection in Microarray
Problems
18:15 - 19:15 Touristic visit
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Tuesday, June 6
09:00 - 09:50 Marie-France Sagot: Algorithmically Exploring and Exploiting
Interspecific Interactions - Invited lecture
09:50 - 10:20 Coffee break
10:20 - 11:10
Alex Ozdemir, Michael Sheely, Daniel Bork, Ricson Cheng, Reyna Hulett, Jean
Sung, Jincheng Wang and Ran Libeskind-Hadas: Clustering the Space of Maximum
Parsimony Reconciliations in the Duplication-Transfer-Loss Model
T.M. Rezwanul Islam and Ian McQuillan: CSA-X: Modularized Constrained Multiple
Sequence Alignment
11:10 - 11:25 Break
11:25 - 12:15
Ozan Kahramanogullari: Quantifying Information Flow in Chemical Reaction
Networks
Gabriel H.G. Silva, Edans F.O. Sandes, George Teodoro and Alba C.M A. Melo:
Parallel Biological Sequence Comparison in Linear Space with Multiple
Adjustable Bands
12:15 - 12:25 Closing
12:25 - Lunch
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