Hi HDF5 users/developers, I am trying to bring up HDF5 1.8.X (X = 14, 15, 16) on a new test bed system at Sandia using OpenMPI 1.10.1 and Intel 16.1.150 compilers.
During the "make test" I get the following output for these libraries. Rather oddly, the tests are reported as a failure but the test being run is reported PASSED (see the output below). If I proceed to go ahead and install the libraries then I do receive I/O errors in my application. Has anyone tried this combination of HDF5, MPI and Intel compilers and had success or are there some pointers to what may need to be checked? Thanks for your help, Configure Line: ./configure --prefix=/home/projects/x86-64/hdf5/1.8.15/openmpi/1.10.1/intel/16.1.150 --enable-static --disable-shared --enable-parallel --enable-hl CC=/home/projects/x86-64/openmpi/1.10.1/intel/16.1.150/bin/mpicc CXX=/home/projects/x86-64/openmpi/1.10.1/intel/16.1.150/bin/mpicxx FC=/home/projects/x86-64/openmpi/1.10.1/intel/16.1.150/bin/mpif90 CFLAGS="-O3 -g -fPIC" CXXFLAGS="-O3 -g -fPIC" FCFLAGS="-O3 -g -fPIC" --enable-fortran --with-zlib=/home/projects/x86-64/zlib/1.2.8 Test Output: <.. Lots of Output ..> make[4]: Entering directory `/home/sdhammo/hdf5/hdf5-1.8.15/testpar' ============================ Testing t_pflush1 ============================ t_pflush1 Test Log ============================ Testing H5Fflush (part1) *** Hint *** You can use environment variable HDF5_PARAPREFIX to run parallel test files in a different directory or to add file type prefix. E.g., HDF5_PARAPREFIX=pfs:/PFS/user/me export HDF5_PARAPREFIX *** End of Hint *** PASSED -------------------------------------------------------------------------- mpiexec has exited due to process rank 0 with PID 91152 on node node17 exiting improperly. There are three reasons this could occur: 1. this process did not call "init" before exiting, but others in the job did. This can cause a job to hang indefinitely while it waits for all processes to call "init". By rule, if one process calls "init", then ALL processes must call "init" prior to termination. 2. this process called "init", but exited without calling "finalize". By rule, all processes that call "init" MUST call "finalize" prior to exiting or it will be considered an "abnormal termination" 3. this process called "MPI_Abort" or "orte_abort" and the mca parameter orte_create_session_dirs is set to false. In this case, the run-time cannot detect that the abort call was an abnormal termination. Hence, the only error message you will receive is this one. This may have caused other processes in the application to be terminated by signals sent by mpiexec (as reported here). You can avoid this message by specifying -quiet on the mpiexec command line. -------------------------------------------------------------------------- 21.72user 2.13system 0:08.38elapsed 284%CPU (0avgtext+0avgdata 12960maxresident)k 9568inputs+3896outputs (1major+30976minor)pagefaults 0swaps make[4]: *** [t_pflush1.chkexe_] Error 1 make[4]: Leaving directory `/home/sdhammo/hdf5/hdf5-1.8.15/testpar' make[3]: *** [build-check-p] Error 1 make[3]: Leaving directory `/home/sdhammo/hdf5/hdf5-1.8.15/testpar' make[2]: *** [test] Error 2 make[2]: Leaving directory `/home/sdhammo/hdf5/hdf5-1.8.15/testpar' make[1]: *** [check-am] Error 2 make[1]: Leaving directory `/home/sdhammo/hdf5/hdf5-1.8.15/testpar' make: *** [check-recursive] Error 1 -- Simon Hammond Center for Computing Research (Scalable Computer Architectures) Sandia National Laboratories, NM [Sent from remote connection, please excuse typing errors] _______________________________________________ Hdf-forum is for HDF software users discussion. [email protected] http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org Twitter: https://twitter.com/hdf5
