Regards, I have not paid attention to the thread until this point. I am not sure how to solve the compile errors present.
However, I have two macs, one mavericks, one yosemite. On both machines I have used homebrew (http://brew.sh) very happily to manage my software installations. Homebrew provides an hdf5 installer (in the lingo, you have to “brew tap homebrew-science” and then it provides the ruby install script). It supports both scalar and parallel builds. see this thread https://github.com/Homebrew/homebrew/issues/23144 I have removed any trace of macports and fink from my machines (actually, never installed them on these two), and only use homebrew to install packages it has, and then set up my env to use my brew installed gcc (or native clang) compiled code. I have also used it to successfully build my own python env, and can then pip install any python packages I want. Bottom line, this is not the type of thing I am particularly good at, and so far, I have not found a package I want that homebrew (+ google searches for help) has not provided. A nice feature of homebrew is that it installs in /usr/local by default, and so does not require any sys-admin privileges. I highly recommend the homebrew method. Regards, Andre > On Jul 14, 2015, at 12:06 PM, Pierre de Buyl <[email protected]> > wrote: > > Hi, > > I am out of guesses on what to try next. I never had any issue building HDF5 > on > mac or linux. On mac this was before the move to clang though. > > A final advice though: have a consistent developer environment. one of > icc+ifort, gcc+gfortran, etc. make sure to build everything with that same > environmnent (including compiler versions), that is szip if you use it, etc. > the > parallel system must use the same compilers. > > If you want to proceed step wise you could make sure that you are able to > compile and use the regular C HDF5 library, then use the parallel version (to > obtain h5pcc) and then add fortran to obtain h5pfc. > > always clean up your build directory (by deleting the build directory and > re-unpacking the tar file for instance) and the installation location. > > If you still do not succeed, you may want to find local assistance (sys admin, > hpc user, it support, etc). > > Regards, > > Pierre > > On Sun, Jul 12, 2015 at 06:38:33PM +0300, Elisabetta Strazzeri wrote: >> Hello, >> >> I've run the ./configure in my Mac in this way: >> >> ./configure --prefix=/usr/local --enable-fortran --enable-cxx >> --with-szlib=/usr/lib >> >> and I typed : make but at the end a lot of errors were found: >> >> *./H5f90proto.h:100:16: **error: **function cannot return function type >> 'int_f (_fcd, int_f *, int_f *, hid_t_f *, hid_t_f *, hid_t_f *)'* >> >> H5_FCDLL int_f nh5fcreate_c (_fcd name, int_f *namelen, int_f >> *access_flags, hid_t_f *crt_prp, hid_t_f *acc_prp, hid_t_f *file_id); >> >> * ^* >> >> *./H5f90proto.h:83:46: **note: *expanded from macro 'nh5fcreate_c' >> >> #define nh5fcreate_c H5_FC_FUNC_(h5fcreate_c, H5FCREATE_C) >> >> * ^* >> >> *./H5f90proto.h:100:16: **error: **a parameter list without types is only >> allowed in a function definition* >> >> *./H5f90proto.h:83:47: **note: *expanded from macro 'nh5fcreate_c' >> >> #define nh5fcreate_c H5_FC_FUNC_(h5fcreate_c, H5FCREATE_C) >> >> * ^* >> >> *./H5f90proto.h:101:16: **error: **function cannot return function type >> 'int_f (_fcd, int_f *, int_f *, hid_t_f *, hid_t_f *)'* >> >> H5_FCDLL int_f nh5fopen_c (_fcd name, int_f *namelen, int_f *access_flags, >> hid_t_f *acc_prp, hid_t_f *file_id); >> >> * ^* >> >> *./H5f90proto.h:86:46: **note: *expanded from macro 'nh5fopen_c' >> >> #define nh5fopen_c H5_FC_FUNC_(h5fopen_c, H5FOPEN_C) >> >> * ^* >> >> *./H5f90proto.h:101:16: **error: **a parameter list without types is only >> allowed in a function definition* >> >> *./H5f90proto.h:86:47: **note: *expanded from macro 'nh5fopen_c' >> >> #define nh5fopen_c H5_FC_FUNC_(h5fopen_c, H5FOPEN_C) >> >> * ^* >> >> *./H5f90proto.h:102:16: **error: **function cannot return function type >> 'int_f (_fcd, int_f *, int_f *)'* >> >> H5_FCDLL int_f nh5fis_hdf5_c (_fcd name, int_f *namelen, int_f *flag); >> >> * ^* >> >> *./H5f90proto.h:87:46: **note: *expanded from macro 'nh5fis_hdf5_c' >> >> #define nh5fis_hdf5_c H5_FC_FUNC_(h5fis_hdf5_c, H5FIS_HDF5_C) >> >> * ^* >> >> *./H5f90proto.h:102:16: **error: **a parameter list without types is only >> allowed in a function definition* >> >> *./H5f90proto.h:87:47: **note: *expanded from macro 'nh5fis_hdf5_c' >> >> #define nh5fis_hdf5_c H5_FC_FUNC_(h5fis_hdf5_c, H5FIS_HDF5_C) >> >> * ^* >> >> *./H5f90proto.h:103:16: **error: **function cannot return function type >> 'int_f (hid_t_f *)'* >> >> H5_FCDLL int_f nh5fclose_c (hid_t_f *file_id); >> >> * ^* >> >> *./H5f90proto.h:85:46: **note: *expanded from macro 'nh5fclose_c' >> >> #define nh5fclose_c H5_FC_FUNC_(h5fclose_c, H5FCLOSE_C) >> >> * ^* >> >> *./H5f90proto.h:103:16: **error: **a parameter list without types is only >> allowed in a function definition* >> >> *./H5f90proto.h:85:47: **note: *expanded from macro 'nh5fclose_c' >> >> #define nh5fclose_c H5_FC_FUNC_(h5fclose_c, H5FCLOSE_C) >> >> * ^* >> >> *./H5f90proto.h:104:16: **error: **function cannot return function type >> 'int_f (hid_t_f *, _fcd, int_f *, hid_t_f *, hid_t_f *)'* >> >> H5_FCDLL int_f nh5fmount_c (hid_t_f *loc_id, _fcd dsetname, int_f *namelen, >> hid_t_f *file_id, hid_t_f *acc_prp); >> >> * ^* >> >> *./H5f90proto.h:88:46: **note: *expanded from macro 'nh5fmount_c' >> >> #define nh5fmount_c H5_FC_FUNC_(h5fmount_c, H5FMOUNT_C) >> >> * ^* >> >> *./H5f90proto.h:104:16: **error: **a parameter list without types is only >> allowed in a function definition* >> >> *./H5f90proto.h:88:47: **note: *expanded from macro 'nh5fmount_c' >> >> #define nh5fmount_c H5_FC_FUNC_(h5fmount_c, H5FMOUNT_C) >> >> * ^* >> >> *./H5f90proto.h:105:16: **error: **function cannot return function type >> 'int_f (hid_t_f *, _fcd, int_f *)'* >> >> H5_FCDLL int_f nh5funmount_c (hid_t_f *loc_id, _fcd dsetname, int_f >> *namelen); >> >> * ^* >> >> *./H5f90proto.h:89:46: **note: *expanded from macro 'nh5funmount_c' >> >> #define nh5funmount_c H5_FC_FUNC_(h5funmount_c, H5FUNMOUNT_C) >> >> * ^* >> >> *./H5f90proto.h:105:16: **error: **a parameter list without types is only >> allowed in a function definition* >> >> *./H5f90proto.h:89:47: **note: *expanded from macro 'nh5funmount_c' >> >> #define nh5funmount_c H5_FC_FUNC_(h5funmount_c, H5FUNMOUNT_C) >> >> * ^* >> >> *./H5f90proto.h:106:16: **error: **function cannot return function type >> 'int_f (hid_t_f *, hid_t_f *)'* >> >> H5_FCDLL int_f nh5freopen_c (hid_t_f *file_id1, hid_t_f *file_id2); >> >> * ^* >> >> *./H5f90proto.h:90:46: **note: *expanded from macro 'nh5freopen_c' >> >> #define nh5freopen_c H5_FC_FUNC_(h5freopen_c, H5FREOPEN_C) >> >> * ^* >> >> *./H5f90proto.h:106:16: **error: **a parameter list without types is only >> allowed in a function definition* >> >> *./H5f90proto.h:90:47: **note: *expanded from macro 'nh5freopen_c' >> >> #define nh5freopen_c H5_FC_FUNC_(h5freopen_c, H5FREOPEN_C) >> >> * ^* >> >> *./H5f90proto.h:107:16: **error: **function cannot return function type >> 'int_f (hid_t_f *, hid_t_f *)'* >> >> H5_FCDLL int_f nh5fget_create_plist_c (hid_t_f *file_id, hid_t_f *prop_id); >> >> * ^* >> >> *./H5f90proto.h:91:46: **note: *expanded from macro 'nh5fget_create_plist_c' >> >> #define nh5fget_create_plist_c H5_FC_FUNC_(h5fget_create_plist_c, >> H5FGET_CREATE_PLIST_C) >> >> * ^* >> >> *./H5f90proto.h:107:16: **error: **a parameter list without types is only >> allowed in a function definition* >> >> *./H5f90proto.h:91:47: **note: *expanded from macro 'nh5fget_create_plist_c' >> >> #define nh5fget_create_plist_c H5_FC_FUNC_(h5fget_create_plist_c, >> H5FGET_CREATE_PLIST_C) >> >> * ^* >> >> *./H5f90proto.h:108:16: **error: **function cannot return function type >> 'int_f (hid_t_f *, hid_t_f *)'* >> >> H5_FCDLL int_f nh5fget_access_plist_c (hid_t_f *file_id, hid_t_f >> *access_id); >> >> * ^* >> >> *./H5f90proto.h:92:46: **note: *expanded from macro 'nh5fget_access_plist_c' >> >> #define nh5fget_access_plist_c H5_FC_FUNC_(h5fget_access_plist_c, >> H5FGET_ACCESS_PLIST_C) >> >> * ^* >> >> *./H5f90proto.h:108:16: **error: **a parameter list without types is only >> allowed in a function definition* >> >> *./H5f90proto.h:92:47: **note: *expanded from macro 'nh5fget_access_plist_c' >> >> #define nh5fget_access_plist_c H5_FC_FUNC_(h5fget_access_plist_c, >> H5FGET_ACCESS_PLIST_C) >> >> * ^* >> >> *./H5f90proto.h:109:16: **error: **function cannot return function type >> 'int_f (hid_t_f *, int_f *, size_t_f *)'* >> >> H5_FCDLL int_f nh5fget_obj_count_c (hid_t_f *file_id, int_f *obj_type, >> size_t_f *obj_count); >> >> * ^* >> >> *./H5f90proto.h:93:46: **note: *expanded from macro 'nh5fget_obj_count_c' >> >> #define nh5fget_obj_count_c H5_FC_FUNC_(h5fget_obj_count_c, >> H5FGET_OBJ_COUNT_C) >> >> * ^* >> >> *fatal error: *too many errors emitted, stopping now [-ferror-limit=] >> >> 20 errors generated. >> >> make[3]: *** [H5f90kit.lo] Error 1 >> >> make[2]: *** [all] Error 2 >> >> make[1]: *** [all-recursive] Error 1 >> >> make: *** [all-recursive] Error 1 >> >> ///////////////////////////////////////////////////////////////////////////// >> >> How can I remove these errors and install completely hdf5? >> >> Thank you very much >> >> My Kindest Regards > >> _______________________________________________ >> Hdf-forum is for HDF software users discussion. >> [email protected] >> http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org >> Twitter: https://twitter.com/hdf5 > > > -- > ----------------------------------------------------------- > Pierre de Buyl > KU Leuven - Institute for Theoretical Physics > T +32 16 3 27355 > W http://pdebuyl.be/ > ----------------------------------------------------------- > > _______________________________________________ > Hdf-forum is for HDF software users discussion. > [email protected] > http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org > Twitter: https://twitter.com/hdf5 _______________________________________________ Hdf-forum is for HDF software users discussion. [email protected] http://lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org Twitter: https://twitter.com/hdf5
