Thompson, David <dthomps...@worcester.edu> writes: > On Fri, Sep 2, 2016 at 9:35 AM, Ricardo Wurmus > <ricardo.wur...@mdc-berlin.de> wrote: >> * gnu/packages/bioinformatics.scm (infernal): New variable. >> --- >> gnu/packages/bioinformatics.scm | 27 +++++++++++++++++++++++++++ >> 1 file changed, 27 insertions(+) >> >> diff --git a/gnu/packages/bioinformatics.scm >> b/gnu/packages/bioinformatics.scm >> index 08c2545..1652f71 100644 >> --- a/gnu/packages/bioinformatics.scm >> +++ b/gnu/packages/bioinformatics.scm >> @@ -4835,6 +4835,33 @@ data in the form of VCF files.") >> ;; at https://vcftools.github.io/license.html >> (license license:lgpl3))) >> >> +(define-public infernal >> + (package >> + (name "infernal") >> + (version "1.1.2") >> + (source (origin >> + (method url-fetch) >> + ;; There are no versioned tarballs > > But the version appears in the URL?
Sorry, this comment was supposed to be removed before sending out the patch. Noticed it too late. >> + (uri (string-append "http://eddylab.org/software/infernal/"; >> + "infernal-" version ".tar.gz")) >> + (sha256 >> + (base32 >> + "0sr2hiz3qxfwqpz3whxr6n82p3x27336v3f34iqznp10hks2935c")))) >> + (build-system gnu-build-system) >> + (native-inputs >> + `(("perl" ,perl))) ; for tests >> + (home-page "http://eddylab.org/infernal/";) >> + (synopsis "Inference of RNA alignments") >> + (description "Infernal (\"INFERence of RNA ALignment\") is a tool for >> +searching DNA sequence databases for RNA structure and sequence >> similarities. >> +It is an implementation of a special case of profile stochastic context-free >> +grammars called @dfn{covariance models} (CMs). A CM is like a sequence >> +profile, but it scores a combination of sequence consensus and RNA secondary >> +structure consensus, so in many cases, it is more capable of identifying RNA >> +homologs that conserve their secondary structure more than their primary >> +sequence.") >> + (license license:bsd-3))) >> + >> (define-public r-vegan >> (package >> (name "r-vegan") >> -- >> 2.9.3 >> >> > > LGTM overall. Okay, will push in a moment (after removing the wrong comment). Thanks for taking a look! ~~ Ricardo
