On Tue, Apr 05, 2016 at 08:21:35PM +0300, Efraim Flashner wrote: > On Tue, Apr 05, 2016 at 12:04:56PM -0500, Lukas Gradl wrote: > > On Tue, Apr 05, 2016 at 04:26:59AM -0400, Leo Famulari wrote: > > > On Mon, Apr 04, 2016 at 03:55:51PM -0500, Lukas Gradl wrote: > > > > Hello Guix! > > > > > > > > Attached is a patch to add the SPARTA Direct Simulation Monte Carlo > > > > Software. > > > > > > > > There maybe is a problem with the source URL: The URL always points to > > > > the latest version of the source tar ball which is constantly updated > > > > and immediately released by upstream. This means that the hash of the > > > > source tar ball available at this URL changes several times a month. Is > > > > this acceptable or does anyone have an idea how this should be handled? > > > > > > I assume you've looked for a more stable URL. Are there other distros > > > that have solved this problem? Can you contact the SPARTA developers and > > > ask if there is a solution? > > > > AFAIK this software is not packaged in any other distro. I am already > > in contact with the author of SPARTA, he provided the URL that I used in > > the patch. I explained the problem to him and I am waiting for his > > response. > > > > Thank you! > > Not just for this package but potentially for others, could we stick a > copy on archive.org with a date-stamp or something?
Sorry for the long delay! My message to upstream is still unanswered, so I went ahead and uploaded the tar ball to archive.org. Attached is an updated patch. Thank you! > > -- > Efraim Flashner <efr...@flashner.co.il> אפרים פלשנר > GPG key = A28B F40C 3E55 1372 662D 14F7 41AA E7DC CA3D 8351 > Confidentiality cannot be guaranteed on emails sent or received unencrypted
From 751771dcb3f64b7ad5383906bbfa6e4b24d2c757 Mon Sep 17 00:00:00 2001
From: Lukas Gradl <lgr...@openmailbox.org>
Date: Sat, 23 Apr 2016 01:40:16 -0500
Subject: [PATCH] gnu: Add sparta-dsmc.
* gnu/packages/maths.scm (sparta-dsmc): New variable.
---
gnu/packages/maths.scm | 63 ++++++++++++++++++++++++++++++++++++++++++++++++++
1 file changed, 63 insertions(+)
diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
index 7ea4ca3..241a010 100644
--- a/gnu/packages/maths.scm
+++ b/gnu/packages/maths.scm
@@ -2119,3 +2119,66 @@ are built. It can generate many different fractal types
such as the Mandelbrot
set.")
(home-page "http://www.gnu.org/software/xaos/";)
(license license:gpl2+)))
+
+
+(define-public sparta-dsmc
+ (package
+ (name "sparta-dsmc")
+ (version "20160331")
+ (source
+ (origin
+ (method url-fetch)
+ (uri
+ (string-append "https://archive.org/download/sparta-";
+ version ".tar/sparta-" version ".tar.gz"))
+ (sha256
+ (base32
+ "0w0sdiharqrw6x4msbq01havky15cq7ylkk2y6v59xyy7vnxpnss"))))
+ (build-system gnu-build-system)
+ (inputs `(("openmpi" ,openmpi)
+ ("libjpeg" ,libjpeg)
+ ("python" ,python-2)))
+ (arguments
+ `(#:tests? #f ; there is no "check" target nor any other tests
+ #:phases
+ (modify-phases %standard-phases
+ (delete 'configure)
+ (add-after 'patch-generated-file-shebangs 'chdir-to-src
+ (lambda _
+ (chdir "src")))
+ (add-after 'chdir-to-src
+ 'patch-makefile-shell
+ (lambda _
+ (substitute* (list "MAKE/Makefile.mpi"
+ "MAKE/Makefile.serial")
+ (("/bin/sh") (which "bash")))))
+ (replace 'build
+ (lambda _
+ (and
+ (zero? (system* "make"
+ (format #f "-j~a" (parallel-job-count))
+ "mpi"))
+ (zero? (system* "make"
+ (format #f "-j~a" (parallel-job-count))
+ "serial")))))
+ (replace 'install
+ (lambda _
+ (let* ((out (assoc-ref %outputs "out"))
+ (bin (string-append out "/bin"))
+ (doc (string-append out "/share/doc/sparta-dsmc"))
+ (examples (string-append doc "/examples")))
+ (install-file "spa_mpi" bin)
+ (install-file "spa_serial" bin)
+ (copy-recursively "../examples" examples)
+ (copy-recursively "../doc" doc)))))))
+ (synopsis "Direct Simulation Monte Carlo (DSMC) simulator")
+ (description "SPARTA is a parallel DSMC code for performing
+simulations of low-density gases in 2d or 3d. Particles advect
+through a hierarchical Cartesian grid that overlays the simulation
+box. The grid is used to group particles by grid cell for purposes of
+performing collisions and chemistry. Physical objects with
+triangulated surfaces can be embedded in the grid, creating cut and
+split grid cells. The grid is also used to efficiently find
+particle/surface collisions.")
+ (home-page "http://sparta.sandia.gov/";)
+ (license license:gpl2)))
--
2.7.4
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