Hope UTF8 is correct this time.
>From 0ac514d718121648fb0b851ee2c613fc72a83c79 Mon Sep 17 00:00:00 2001
From: Pjotr Prins <pjotr.publi...@thebird.nl>
Date: Mon, 29 Feb 2016 08:32:40 +0000
Subject: [PATCH 1/4] gnu: r-ggplot2: Update to 2.0.0
* gnu/packages/statistics.scm (r-ggplot2): Update to 2.0.0
---
gnu/packages/statistics.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 08e8654..7e38693 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -465,13 +465,13 @@ legends.")
(define-public r-ggplot2
(package
(name "r-ggplot2")
- (version "1.0.1")
+ (version "2.0.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "ggplot2" version))
(sha256
- (base32 "0794kjqi3lrxb33lr1mykd58959hlgkhdn259vj8fxrh65mqw920"))))
+ (base32 "07r5zw0ccv4sf1mdxcz9wa86p2c6j61cnnq18qdjrh3zhhcbmdp2"))))
(build-system r-build-system)
(propagated-inputs
`(("r-digest" ,r-digest)
--
2.6.3
>From 17068f2417acd4588ffa02182dc6bcc7be89b20e Mon Sep 17 00:00:00 2001
From: Pjotr Prins <pjotr.publi...@thebird.nl>
Date: Mon, 29 Feb 2016 08:37:54 +0000
Subject: [PATCH 2/4] gnu: r-s4vectors: Update to 0.8.11
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.8.11
---
gnu/packages/bioinformatics.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 7b3838d..9f92e9f 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -3667,13 +3667,13 @@ packages.")
(define-public r-s4vectors
(package
(name "r-s4vectors")
- (version "0.8.5")
+ (version "0.8.11")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "S4Vectors" version))
(sha256
(base32
- "10f4jxwlwsiy7zhb3kgp6anid0d7wkvrrljl80r3nhx38yr24l5k"))))
+ "12iibcs63m9iy7f45wgjcqsna2dnqwckphk682389grshz0g4x66"))))
(properties
`((upstream-name . "S4Vectors")
(r-repository . bioconductor)))
--
2.6.3
>From 3bf38a2063a548877367f107ffbfd79c47c1a5bd Mon Sep 17 00:00:00 2001
From: Pjotr Prins <pjotr.publi...@thebird.nl>
Date: Mon, 29 Feb 2016 08:40:38 +0000
Subject: [PATCH 3/4] gnu: r-iranges: Update to 2.4.8
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.4.8
---
gnu/packages/bioinformatics.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 9f92e9f..79c392b 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -3695,13 +3695,13 @@ S4Vectors package itself.")
(define-public r-iranges
(package
(name "r-iranges")
- (version "2.4.6")
+ (version "2.4.8")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "IRanges" version))
(sha256
(base32
- "00x0266sys1fc5ipa639y84p6m6mgspk2xb099vcwmd3w4hypj9d"))))
+ "0hi5k1j5jm4xrg1l506g279qw1xkvp1gg1zgsjzpbng4vx4k4iyl"))))
(properties
`((upstream-name . "IRanges")
(r-repository . bioconductor)))
--
2.6.3
>From 2d150676aafc63bcd41b70c0ae8a544a5f2a03f9 Mon Sep 17 00:00:00 2001
From: Pjotr Prins <pjotr.publi...@thebird.nl>
Date: Mon, 29 Feb 2016 08:46:58 +0000
Subject: [PATCH 4/4] gnu: r-go-db: Bioconductor changed URL for data downloads
* gnu/packages/bioinformatics.scm (r-go-db): Update data URL
---
gnu/packages/bioinformatics.scm | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 79c392b..a4f8096 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -4141,7 +4141,7 @@ extracting the desired features in a convenient format.")
(version "3.2.2")
(source (origin
(method url-fetch)
- (uri (bioconductor-uri "GO.db" version))
+ (uri (string-append "http://www.bioconductor.org/packages/release/data/annotation/src/contrib/GO.db_"; version ".tar.gz"))
(sha256
(base32
"00gariag9ampz82dh0xllrc26r85d7vdcwc0vca5zdy147rwxr7f"))))
--
2.6.3
