Thanks in advance.
>From 95ae898345774f6bb26ce11a340b688118d6c4ba Mon Sep 17 00:00:00 2001
From: Ben Woodcroft <donttrust...@gmail.com>
Date: Sat, 16 Jan 2016 14:31:25 +1000
Subject: [PATCH] gnu: Add cd-hit.
* gnu/packages/bioinformatics.scm (cd-hit): New variable.
---
gnu/packages/bioinformatics.scm | 40 ++++++++++++++++++++++++++++++++++++++++
1 file changed, 40 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index a72765a..87b2519 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -807,6 +807,46 @@ and more accurate. BWA-MEM also has better performance than BWA-backtrack for
multiple sequence alignments.")
(license license:expat)))
+(define-public cd-hit
+ (package
+ (name "cd-hit")
+ (version "4.6.4")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append
+ "https://github.com/weizhongli/cdhit/releases/download/V";
+ version
+ "/cd-hit-v"
+ version
+ "-2015-0603.tar.gz"))
+ (sha256
+ (base32
+ "0b6r52hhz3apx3wbc3zpzmxzyv6p7n3w4x3didadsjbnnav5006a"))))
+ (build-system gnu-build-system)
+ (arguments
+ `(#:tests? #f ; no tests
+ #:make-flags
+ (list (string-append "PREFIX="
+ (assoc-ref %outputs "out")
+ "/bin"))
+ #:phases
+ (modify-phases %standard-phases
+ (delete 'configure)
+ (add-before 'install 'create-output-directory
+ (lambda* (#:key outputs #:allow-other-keys)
+ (mkdir-p (string-append
+ (assoc-ref outputs "out") "/bin")))))))
+ (inputs
+ `(("perl" ,perl)))
+ (home-page "http://weizhongli-lab.org/cd-hit/";)
+ (synopsis "Cluster and compare protein or nucleotide sequences")
+ (description
+ "CD-HIT is a program for clustering and comparing protein or nucleotide
+sequences. CD-HIT is designed to be fast and handle extremely large
+databases.")
+ (license license:gpl2)))
+
(define-public clipper
(package
(name "clipper")
--
2.6.3
