Hi Guix,
attached is a first batch of dependent packages for r-devtools. The
second batch still needs cleaning up; in particular that’s because
r-git2r bundles the sources of libgit2, which I think should really have
its own package.
This set of patches is quite harmless. Some notes:
* I did not place r-httr in web.scm because it depends on stuff from
web.scm as well as statistics.scm, resulting in circular module
dependencies. To avoid this I put r-httr with the other R packages in
statistics.scm.
* Similar reasons apply to why I didn’t place r-xml2 in xml.scm.
And now ... the patches!
~~ Ricardo
>From db404c103cf63cac5ef3382e337372e4af3fcb48 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <ricardo.wur...@mdc-berlin.de>
Date: Tue, 10 Nov 2015 15:55:51 +0100
Subject: [PATCH 1/7] gnu: Add r-curl.
* gnu/packages/web.scm (r-curl): New variable.
---
gnu/packages/web.scm | 25 +++++++++++++++++++++++++
1 file changed, 25 insertions(+)
diff --git a/gnu/packages/web.scm b/gnu/packages/web.scm
index 4d526fc..2ecda35 100644
--- a/gnu/packages/web.scm
+++ b/gnu/packages/web.scm
@@ -2977,3 +2977,28 @@ directory.")
various contexts including the R console, R Markdown documents, and Shiny web
applications.")
(license l:expat)))
+
+(define-public r-curl
+ (package
+ (name "r-curl")
+ (version "0.9.3")
+ (source (origin
+ (method url-fetch)
+ (uri (cran-uri "curl" version))
+ (sha256
+ (base32
+ "02p9s1jlk8dcbvn71ivn4xnrqh9dwqyhgn4s1fzcfmnmfxhl5gld"))))
+ (build-system r-build-system)
+ (inputs
+ `(("libcurl" ,curl)))
+ (home-page "https://github.com/jeroenooms/curl";)
+ (synopsis "HTTP client for R")
+ (description
+ "The @code{curl()} and @code{curl_download()} functions provide highly
+configurable drop-in replacements for base @code{url()} and
+@code{download.file()} with better performance, support for encryption, gzip
+compression, authentication, and other @code{libcurl} goodies. The core of
+the package implements a framework for performing fully customized requests
+where data can be processed either in memory, on disk, or streaming via the
+callback or connection interfaces.")
+ (license l:expat)))
--
2.1.0
>From 6bb0ed5c5f0dabd654618f377a8903a804580baa Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <ricardo.wur...@mdc-berlin.de>
Date: Tue, 10 Nov 2015 16:10:09 +0100
Subject: [PATCH 2/7] gnu: Add r-xml2.
* gnu/packages/statistics.scm (r-xml2): New variable.
---
gnu/packages/statistics.scm | 25 +++++++++++++++++++++++++
1 file changed, 25 insertions(+)
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 0c0464c..cbcb05c 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -41,6 +41,7 @@
#:use-module (gnu packages texlive)
#:use-module (gnu packages texinfo)
#:use-module (gnu packages base)
+ #:use-module (gnu packages xml)
#:use-module (gnu packages xorg)
#:use-module (gnu packages zip)
#:use-module (srfi srfi-1))
@@ -1053,3 +1054,27 @@ inference for statistical models.")
(native-inputs
`(("python2-setuptools" ,python2-setuptools)
,@(package-native-inputs stats))))))
+
+(define-public r-xml2
+ (package
+ (name "r-xml2")
+ (version "0.1.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "xml2" version))
+ (sha256
+ (base32
+ "0jjilz36h7vbdbkpvjnja1vgjf6d1imql3z4glqn2m2b74w5qm4c"))))
+ (build-system r-build-system)
+ (inputs
+ `(("libxml2" ,libxml2)))
+ (propagated-inputs
+ `(("r-rcpp" ,r-rcpp)
+ ("r-bh" ,r-bh)))
+ (home-page "https://github.com/hadley/xml2";)
+ (synopsis "Parse XML with R")
+ (description
+ "This package provides a simple, consistent interface to working with XML
+files in R. It is built on top of the libxml2 C library.")
+ (license license:gpl2+)))
--
2.1.0
>From 31040b8e361b3bf928b1f4ee6cfc91c55046a474 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <ricardo.wur...@mdc-berlin.de>
Date: Tue, 10 Nov 2015 16:17:34 +0100
Subject: [PATCH 3/7] gnu: Add r-rversions.
* gnu/packages/statistics.scm (r-rversions): New variable.
---
gnu/packages/statistics.scm | 23 +++++++++++++++++++++++
1 file changed, 23 insertions(+)
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index cbcb05c..a0ae5c1 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -41,6 +41,7 @@
#:use-module (gnu packages texlive)
#:use-module (gnu packages texinfo)
#:use-module (gnu packages base)
+ #:use-module (gnu packages web)
#:use-module (gnu packages xml)
#:use-module (gnu packages xorg)
#:use-module (gnu packages zip)
@@ -1078,3 +1079,25 @@ inference for statistical models.")
"This package provides a simple, consistent interface to working with XML
files in R. It is built on top of the libxml2 C library.")
(license license:gpl2+)))
+
+(define-public r-rversions
+ (package
+ (name "r-rversions")
+ (version "1.0.2")
+ (source (origin
+ (method url-fetch)
+ (uri (cran-uri "rversions" version))
+ (sha256
+ (base32
+ "0xmi461g1rf5ngb7r1sri798jn6icld1xq25wj9jii2ca8j8xv68"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-curl" ,r-curl)
+ ("r-xml2" ,r-xml2)))
+ (home-page "https://github.com/metacran/rversions";)
+ (synopsis "Query R versions, including 'r-release' and 'r-oldrel'")
+ (description
+ "This package provides functions to query the main R repository to find
+the versions that @code{r-release} and @code{r-oldrel} refer to, and also all
+previous R versions and their release dates.")
+ (license license:expat)))
--
2.1.0
>From a121665057d98e037753053e80c4e7f88651efee Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <ricardo.wur...@mdc-berlin.de>
Date: Tue, 10 Nov 2015 16:19:16 +0100
Subject: [PATCH 4/7] gnu: Add r-whisker.
* gnu/packages/statistics.scm (r-whisker): New variable.
---
gnu/packages/statistics.scm | 18 ++++++++++++++++++
1 file changed, 18 insertions(+)
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index a0ae5c1..a5be5d9 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -1101,3 +1101,21 @@ files in R. It is built on top of the libxml2 C library.")
the versions that @code{r-release} and @code{r-oldrel} refer to, and also all
previous R versions and their release dates.")
(license license:expat)))
+
+(define-public r-whisker
+ (package
+ (name "r-whisker")
+ (version "0.3-2")
+ (source (origin
+ (method url-fetch)
+ (uri (cran-uri "whisker" version))
+ (sha256
+ (base32
+ "0z4cn115gxcl086d6bnqr8afi67b6a7xqg6ivmk3l4ng1x8kcj28"))))
+ (build-system r-build-system)
+ (home-page "http://github.com/edwindj/whisker";)
+ (synopsis "Logicless mustache templating for R")
+ (description
+ "This package provides logicless templating, with a syntax that is not
+limited to R.")
+ (license license:gpl3+)))
--
2.1.0
>From ae025aec833c2c7e8c28f20de53d81e99fc9675e Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <ricardo.wur...@mdc-berlin.de>
Date: Tue, 10 Nov 2015 16:20:25 +0100
Subject: [PATCH 5/7] gnu: Add r-brew.
* gnu/packages/statistics.scm (r-brew): New variable.
---
gnu/packages/statistics.scm | 19 +++++++++++++++++++
1 file changed, 19 insertions(+)
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index a5be5d9..5ab13d1 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -1119,3 +1119,22 @@ previous R versions and their release dates.")
"This package provides logicless templating, with a syntax that is not
limited to R.")
(license license:gpl3+)))
+
+(define-public r-brew
+ (package
+ (name "r-brew")
+ (version "1.0-6")
+ (source (origin
+ (method url-fetch)
+ (uri (cran-uri "brew" version))
+ (sha256
+ (base32
+ "1vghazbcha8gvkwwcdagjvzx6yl8zm7kgr0i9wxr4jng06d1l3fp"))))
+ (build-system r-build-system)
+ (home-page "http://cran.r-project.org/web/packages/brew";)
+ (synopsis "Templating framework for report generation")
+ (description
+ "The brew package implements a templating framework for mixing text and R
+code for report generation. The template syntax is similar to PHP, Ruby's erb
+module, Java Server Pages, and Python's psp module.")
+ (license license:gpl2+)))
--
2.1.0
>From 1f18aad5ead9716829678ee6da7e914eaa2eb19e Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <ricardo.wur...@mdc-berlin.de>
Date: Tue, 10 Nov 2015 16:28:23 +0100
Subject: [PATCH 6/7] gnu: Add r-roxygen2.
* gnu/packages/statistics.scm (r-roxygen2): New variable.
---
gnu/packages/statistics.scm | 24 ++++++++++++++++++++++++
1 file changed, 24 insertions(+)
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 5ab13d1..8062a51 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -1138,3 +1138,27 @@ limited to R.")
code for report generation. The template syntax is similar to PHP, Ruby's erb
module, Java Server Pages, and Python's psp module.")
(license license:gpl2+)))
+
+(define-public r-roxygen2
+ (package
+ (name "r-roxygen2")
+ (version "5.0.0")
+ (source (origin
+ (method url-fetch)
+ (uri (cran-uri "roxygen2" version))
+ (sha256
+ (base32
+ "0xjdphjs7l1v71lylmqgp76cbcxzvm9z1a40jgkdwvz072nn08vr"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-brew" ,r-brew)
+ ("r-digest" ,r-digest)
+ ("r-rcpp" ,r-rcpp)
+ ("r-stringi" ,r-stringi)
+ ("r-stringr" ,r-stringr)))
+ (home-page "https://github.com/klutometis/roxygen";)
+ (synopsis "In-source documentation system for R")
+ (description
+ "Roxygen2 is a Doxygen-like in-source documentation system for Rd,
+collation, and NAMESPACE files.")
+ (license license:gpl2+)))
--
2.1.0
>From 5e2fd15e7b3595f476a531b4b4bd47608ba3ec96 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <ricardo.wur...@mdc-berlin.de>
Date: Tue, 10 Nov 2015 16:40:04 +0100
Subject: [PATCH 7/7] gnu: Add r-httr.
* gnu/packages/statistics.scm (r-httr): New variable.
---
gnu/packages/statistics.scm | 27 +++++++++++++++++++++++++++
1 file changed, 27 insertions(+)
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 8062a51..9c277b4 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -1162,3 +1162,30 @@ module, Java Server Pages, and Python's psp module.")
"Roxygen2 is a Doxygen-like in-source documentation system for Rd,
collation, and NAMESPACE files.")
(license license:gpl2+)))
+
+(define-public r-httr
+ (package
+ (name "r-httr")
+ (version "1.0.0")
+ (source (origin
+ (method url-fetch)
+ (uri (cran-uri "httr" version))
+ (sha256
+ (base32
+ "1yprw8p4g8026jhravgg1hdwj1g51cpdgycyr5a58jwm4i5f79cq"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-curl" ,r-curl)
+ ("r-digest" ,r-digest)
+ ("r-jsonlite" ,r-jsonlite)
+ ("r-mime" ,r-mime)
+ ("r-r6" ,r-r6)
+ ("r-stringr" ,r-stringr)))
+ (home-page "https://github.com/hadley/httr";)
+ (synopsis "Tools for working with URLs and HTTP")
+ (description
+ "The aim of httr is to provide a wrapper for RCurl customised to the
+demands of modern web APIs. It provides useful tools for working with HTTP
+organised by HTTP verbs (@code{GET()}, @code{POST()}, etc). Configuration
+functions make it easy to control additional request components.")
+ (license license:expat)))
--
2.1.0
