l...@gnu.org (Ludovic Courtès) writes: > Ricardo Wurmus <ricardo.wur...@mdc-berlin.de> skribis: > >> From e3bd0a861121c441b44d77d30f2aaddb766b49c2 Mon Sep 17 00:00:00 2001 >> From: Ricardo Wurmus <ricardo.wur...@mdc-berlin.de> >> Date: Tue, 23 Jun 2015 10:54:00 +0200 >> Subject: [PATCH 2/2] gnu: Add preseq. >> >> * gnu/packages/bioinformatics.scm (preseq): New variable. > > Please add the .patch files to the commit log and to the .am file. > > OK with this change.
preseq failed to build on Hydra on x86_64 and mips64el. As I write this, the results are not yet in for i686. http://hydra.gnu.org:3000/job/gnu/master/preseq-1.0.2.x86_64-linux http://hydra.gnu.org:3000/job/gnu/master/preseq-1.0.2.mips64el-linux http://hydra.gnu.org:3000/job/gnu/master/preseq-1.0.2.i686-linux Here's the relevant build log excerpt for x86_64: --8<---------------cut here---------------start------------->8--- starting phase `use-samtools-headers' Backtrace: In ice-9/boot-9.scm: 157: 15 [catch #t #<catch-closure 27d5580> ...] In unknown file: ?: 14 [apply-smob/1 #<catch-closure 27d5580>] In ice-9/boot-9.scm: 63: 13 [call-with-prompt prompt0 ...] In ice-9/eval.scm: 432: 12 [eval # #] In ice-9/boot-9.scm: 2401: 11 [save-module-excursion #<procedure 27f2880 at ice-9/boot-9.scm:4045:3 ()>] 4050: 10 [#<procedure 27f2880 at ice-9/boot-9.scm:4045:3 ()>] 1724: 9 [%start-stack load-stack ...] 1729: 8 [#<procedure 2808c60 ()>] In unknown file: ?: 7 [primitive-load "/gnu/store/6pzf2jhf9syyc02wbgl9mxma4wf2qxj2-preseq-1.0.2-guile-builder"] In ice-9/eval.scm: 387: 6 [eval # ()] In srfi/srfi-1.scm: 830: 5 [every1 #<procedure 2cb91e0 at /gnu/store/l1019wb5yzbar26cxxqrm88xkbn5gwv1-module-import/guix/build/gnu-build-system.scm:584:9 (expr)> ...] In /gnu/store/l1019wb5yzbar26cxxqrm88xkbn5gwv1-module-import/guix/build/gnu-build-system.scm: 588: 4 [#<procedure 2cb91e0 at /gnu/store/l1019wb5yzbar26cxxqrm88xkbn5gwv1-module-import/guix/build/gnu-build-system.scm:584:9 (expr)> #] In ice-9/eval.scm: 432: 3 [eval # #] In srfi/srfi-1.scm: 619: 2 [for-each #<procedure 2cf4de0 at ice-9/eval.scm:416:20 (a)> #] In /gnu/store/l1019wb5yzbar26cxxqrm88xkbn5gwv1-module-import/guix/build/utils.scm: 486: 1 [with-atomic-file-replacement "smithlab_cpp/SAM.cpp" ...] In unknown file: ?: 0 [mkstemp! "smithlab_cpp/SAM.cpp.XXXXXX"] ERROR: In procedure mkstemp!: ERROR: In procedure mkstemp!: No such file or directory builder for `/gnu/store/2ll28ypms57h0k44f4mmclhw9dz3ccvm-preseq-1.0.2.drv' failed with exit code 1 @ build-failed /gnu/store/2ll28ypms57h0k44f4mmclhw9dz3ccvm-preseq-1.0.2.drv - 1 builder for `/gnu/store/2ll28ypms57h0k44f4mmclhw9dz3ccvm-preseq-1.0.2.drv' failed with exit code 1 guix build: error: build failed: build of `/gnu/store/2ll28ypms57h0k44f4mmclhw9dz3ccvm-preseq-1.0.2.drv' failed --8<---------------cut here---------------end--------------->8--- Mark
